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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Artr9g04594 ATGGCCAACAACCCAGCCGCCGTAAACTTCCTCACTAACATCGCACGCGCCGCCGTCGGCCTCGGCCTATCCGCCACAGTCGCCAACTCCGCCCTCTACACAGTCGACGGCGGTCAACGCGCCGTCTTATTTGACCGATTCCGTGGAGTCCTCGACGACACAGTAGGTGAAGGCACTCACTTCCTAGTCCCATGGCTTCAAACTCCTTACATTTTCGACATCCGTACAAGGCCCCACACTTTCTCCTCAATTTCCGGAACCAAAGACCTTCAGATGGTTAACCTAACCCTGCGCGTGCTCTCACGCCCCGAGGTTACCCGCCTTCCCGCCATTTTCAAAACCCTAGGTACTGAGTATGATGAGAAGGTGTTGCCTTCTATTGGTAACGAGGTGTTGAAAGCTGTTGTGGCTCAGTTTAACGCTGATCAGCTCCTTACGGAGCGTCCGCAGGTCTCGGCGTTGGTTCGCGACAGTTTGGTGAAGCGTGCCAAGGATTTTAACATTTGTTTGGATGACGTGGCGATTACGCACTTGTCGTATGGTGCGGAGTTTAGTAAGGCGGTTGAGCAGAAGCAGGTGGCGCAACAGGAGGCTGAGAGGAGTAAGTTTGTTGTGGCGAAAGCGGAGCAGGAGAGGAGAGCTGCGATTATTAGGGCGGAAGGTGAGAGTGAGAGTGCTAAGCTGATTTCGGATGCGACTAGTGCTGCTGGTATGGGGTTGATTGAGTTGAGGAGGATTGAGGCGAGTAGGGAGATTTCGACTACTTTGGCTAGGAGTGGGAATGTGATGTATTTGCCCAATACTGGGAGTCAGATGTTGCTTGGACTTAATCCCTCTCGTTAG 843 53.14 MANNPAAVNFLTNIARAAVGLGLSATVANSALYTVDGGQRAVLFDRFRGVLDDTVGEGTHFLVPWLQTPYIFDIRTRPHTFSSISGTKDLQMVNLTLRVLSRPEVTRLPAIFKTLGTEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPQVSALVRDSLVKRAKDFNICLDDVAITHLSYGAEFSKAVEQKQVAQQEAERSKFVVAKAEQERRAAIIRAEGESESAKLISDATSAAGMGLIELRRIEASREISTTLARSGNVMYLPNTGSQMLLGLNPSR* 281
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Artr9g04594 280 SUPERFAMILY Band 7-SPFH domain 63 199 IPR036013 -
Artr9g04594 280 PANTHER PROHIBITIN 5 278 IPR000163 GO:0005739(PANTHER)|GO:0007005(PANTHER)|GO:0016020(InterPro)
Artr9g04594 280 FunFam Prohibitin 2 60 194 - -
Artr9g04594 280 Coils Coil 191 211 - -
Artr9g04594 280 CDD SPFH-prohibitin 32 226 IPR000163 GO:0016020(InterPro)
Artr9g04594 280 PRINTS Prohibitin signature 210 226 IPR000163 GO:0016020(InterPro)
Artr9g04594 280 PRINTS Prohibitin signature 75 91 IPR000163 GO:0016020(InterPro)
Artr9g04594 280 PRINTS Prohibitin signature 116 134 IPR000163 GO:0016020(InterPro)
Artr9g04594 280 PRINTS Prohibitin signature 93 112 IPR000163 GO:0016020(InterPro)
Artr9g04594 280 PRINTS Prohibitin signature 139 155 IPR000163 GO:0016020(InterPro)
Artr9g04594 280 PRINTS Prohibitin signature 187 210 IPR000163 GO:0016020(InterPro)
Artr9g04594 280 PRINTS Prohibitin signature 162 181 IPR000163 GO:0016020(InterPro)
Artr9g04594 280 SMART PHB-4 31 192 IPR001107 -
Artr9g04594 280 Pfam SPFH domain - Band 7 family 34 211 IPR001107 -
Artr9g04594 280 Gene3D Band 7 domain 60 194 IPR036013 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Artr9g04594 K17080 prohibitin 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Artr Artr-Chr6:221190663 Artr9g04594 Artr-Chr9:182414924 dispersed
Artr Artr-Chr7:182353943 Artr9g04594 Artr-Chr9:182414924 dispersed