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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01309 ATGTCCTTCCCACTAACCCTAATCTCCATCTTCCTGTTATCATCATCTCTACCAACCATCACCTCACTAACCGCATACGAAGCACTCGAGTCATACGGCTTCCCGGCAGGCCTTCTTCCCATCGGAGTCACCGGGTACACTCTCGACGAAGAAACCGGCAAGTTCGAAGCCTACTTACCGGACACATGCTCGTACACAGTTCAAGGGTACAACCTTAAGTACAAGTCCACCATAAGTGGAGTCATAAGTCAAGACAAGATCACCAACTTGAAGGGTATAAGTGTCAAAGTGTTGTTCTTTTGGTTGGATATTGTGGAAGTGAGCCGTGATGGAGATGAGTTGTACTTGTCGGTTGGGATAGTGTCGGCTGGGTTTGATATTAGTGGGTTTATCGAGTCGCCGCAGTGTGGGTGTGGGTTTGATTGTAATCAGTTGTTTGGAAAGATTAAGGAAGATGAGAGTGACAAGATCATGGGGTTGAGGTCTGGTTTGTGA 495 47.07 MSFPLTLISIFLLSSSLPTITSLTAYEALESYGFPAGLLPIGVTGYTLDEETGKFEAYLPDTCSYTVQGYNLKYKSTISGVISQDKITNLKGISVKVLFFWLDIVEVSRDGDELYLSVGIVSAGFDISGFIESPQCGCGFDCNQLFGKIKEDESDKIMGLRSGL 164
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01309 164 Gene3D - 12 132 IPR036758 -
Bial10g01309 164 Pfam Protein of unknown function, DUF538 25 130 IPR007493 -
Bial10g01309 164 SUPERFAMILY At5g01610-like 7 142 IPR036758 -
Bial10g01309 164 PANTHER T31J12.3 PROTEIN-RELATED 22 137 IPR007493 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01309 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
24018 Bial10g01309 Bial17g00112
24019 Bial10g01309 Bial5g01073
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
671111 Bial Bial10g01309 Bial-Chr10:13041781 Bial16g00833 Bial-Chr16:10476963
778461 Bial Bial10g01309 Bial-Chr10:13041781 Bial16g00832 Bial-Chr16:10474987
778536 Bial Bial10g01309 Bial-Chr10:13041781 Bial17g00112 Bial-Chr17:2928624
783553 Bial Bial10g01309 Bial-Chr10:13041781 Bial4g00890 Bial-Chr4:11056823
783561 Bial Bial10g01309 Bial-Chr10:13041781 Bial4g00976 Bial-Chr4:11965525
783834 Bial Bial10g01309 Bial-Chr10:13041781 Bial5g01073 Bial-Chr5:15388031
784562 Bial Bial10g01309 Bial-Chr10:13041781 Bial7g02455 Bial-Chr7:58820444