AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01331 ATGAAATTCAAACTCTTCAATCCAAATCTCATCAAACACTTTCACAAATCATCATCATTCACCAACAACAGACCATTTCGCCCTTTGATTCCACACTTATCCGATCAATCATCATTCAATAATAATAACAATTATAATTACCGTGAAAACCCTAGTTTAACGACCTGGAAGCGGTGGCACGTCAGTCATTCTCACCACCACCACGATCAGACCAGTAAAGAAGGCGATCGGATATTCAAGCTCGGCTTGGCTGCTGACGTCGGATTAACCGCCGGTAAAGTGTTGGCCGGTTATTTGTCCGGTAGCACTGCTATTATCGCCGATGCTGCACATTCTATCTCCGATGTGGGGGTACTGTCAGCAGCTTCTGAGATAGCTAATCAATCATTGCCACATCAGCATGCTGACAATCACATCCATCATCATGGGATTGATATGAATCATCCTATCCTTGCTTTGAATACAACTATTGTTGCCATTGCTGTTAAAGAAGGATTGTTTTGGATAACAAAAAGGGCAGGAGAAAGAACTGGCAGTGGATTGATGATTGCAAATGCATGGCATCATCGTGCGGATGCAATTTCATCACTTGTTGCTCTTATCGGGGTAGGTGGATCTATTCTTGGGGTTCGGTTTCTTGATCCCCTTGCTGGACTTGTTGTCTCGGGCATGATCTTTAAGATTGGACTCCAAACTGGGTACCAAAGTATCATGGAGCTGGTGGATGCTGCAATACCATCACATGATTTAGACTCAATCAGAAAGACAATTGATCCTTTTTGTAGTCTAAGCATAGCTCATCAAATTGGTGAAAGTGTTCGGGACCAGATTCAGAATTCTCACCCGGAAGTTTCTGAAGTCTTCATACAGTTAGGTAAGCAACTCGTTACTGTATTTATGTTAACGGCTTCCATTGACGAAACAGGCCCGGAATTATTATTGTTATTTTTTCCGTCTTACTTTTCAGAACCCGCCACTAAGCTAGAAGTTGCGGATGATTTGAACGATTCGGTTTTAGAAGATGATGAGATTAAAGAAATGGTTACCAGGTTGCTGACTAAGGGGTTGTCTGAGAAAGCAGTTATCAAGCGTGTACGAAAACGCAAACTGCAAGACAAGAGTTTGCTTGAAGTTGACGTCTCCATGCCAGTTGATGCTTTGATCAGGAGTGATGAAATGAAAGTTCCAATGGAATACAAGGGCTTTGACATGCAAGTAAACATTTCAAATAGTAGTCAAGATTGA 1245 41.93 MKFKLFNPNLIKHFHKSSSFTNNRPFRPLIPHLSDQSSFNNNNNYNYRENPSLTTWKRWHVSHSHHHHDQTSKEGDRIFKLGLAADVGLTAGKVLAGYLSGSTAIIADAAHSISDVGVLSAASEIANQSLPHQHADNHIHHHGIDMNHPILALNTTIVAIAVKEGLFWITKRAGERTGSGLMIANAWHHRADAISSLVALIGVGGSILGVRFLDPLAGLVVSGMIFKIGLQTGYQSIMELVDAAIPSHDLDSIRKTIDPFCSLSIAHQIGESVRDQIQNSHPEVSEVFIQLGKQLVTVFMLTASIDETGPELLLLFFPSYFSEPATKLEVADDLNDSVLEDDEIKEMVTRLLTKGLSEKAVIKRVRKRKLQDKSLLEVDVSMPVDALIRSDEMKVPMEYKGFDMQVNISNSSQD 414
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01331 414 NCBIfam cation diffusion facilitator family transporter 143 257 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Bial10g01331 414 Gene3D Cation efflux protein transmembrane domain 76 134 IPR027469 -
Bial10g01331 414 Gene3D Cation efflux protein transmembrane domain 135 241 IPR027469 -
Bial10g01331 414 Pfam Cation efflux family 141 241 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Bial10g01331 414 SUPERFAMILY Cation efflux protein transmembrane domain-like 75 242 IPR027469 -
Bial10g01331 414 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 42 118 IPR050291 GO:0008324(PANTHER)|GO:0016020(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01331 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
182254 Bial10g01331 Bial22g00921
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:13291155 Bial15g02383 Bial-Chr15:70402530 dispersed
Bial Bial-Chr10:13291155 Bial22g00921 Bial-Chr22:8848936 wgd