AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01332 ATGGTGTTCCTGTCCGCAATGAACAACATTCAAATGACGTCATCGAGAATCGTTCCTTCAATACCACCACAATTTTCACCTCGATTCAACCTACCGAACAGATGCCTCTTCGTTCGCCCTTCGCGAACTCAAAAACCGCTCACGCGAATCGTTTGCATGGCTGAGCCTTATCTTTTGAAGAAACTCGATTCGGCTGAGAAAACCTGGAAAGAGTTATCGGTTAAGTTAGCAGATCCTGATGTGGTTTCAAATCCTAGTGAGTACCAAAAGCTAGCACAATCTATGTCTGAACTTGATGAGGTTGTAGCAACATACAGAGGATTCAAGGATTGTGAGAAACAGCTTGAAGAGTCCAAAGTTTTATCAAAAGATCCTGACATTGATGAAGAGATGGCTGAGATGATAGCTTCTGAAATTGAAACTTTATCTGACCAACTTTTGATGCTACTGATTCCAACTGATCCTCTGGATTCTAGAAACATCTTGCTTGAAGTTAGGGCTGGTACAGGTGGTGAAGAGGCTGGACTTTGGGCCGCTGACCTTGCTGAAAGAGGAGGATACAAGACTTATGTTATGGAAGTTAAAGGTGCTCGGGTATATAGTAAACTAAAGTATGAATCGGGTGTCCATAGAGTCCAACGTGTCCCTCAAACCGAAACCCAAGGCCGTATACACACTTCAACTGCCACAGTGGCCATCATGCCAGAGGTAGTTACTTTACACCTTATGCAACTTTTAACTACTTTGCTAGTGCTACTTAAGAAGTTTGACGTGATGAGACTCGAGTTCATAAACAAGGTGGCAAAATTGGCAAGTGGGGCGGGTTCAGATGGTCAAGGGTCAGAACAGGTTTACCCGCTATATATTTTTATTGCCGCTGGTAGCGATGATGGAGGTGGCTACGTCGGTGATAAGGATGATTTTGGACGTGGCGGGGGGATGGCAGGGACTGAGGCGGAAGTAGTGGTGGTTGGTGAGTGTGGGACGGTTGAGGCGCTGGTGGCTGAAGAAGTTGATGTGGTAATTGATCCAAAAGATATTGATCTTACAACTGCAAGATCTGGTGGTGCTGGAGGTCAGAATGTGAATAAGGTGGAAACCGCAGTGGATCTTTTCCACAAGCCAACCGGAATCAGAATCTTTTGCACAGAAGAAAGAAGCCAACTTAAAAATAAAACGCGTGCACTTCAACTATTGCGTGCAAAACTGGTCACTGATCATAGATTAAAGATGAACTTTGAGCTCACTTCATTTCTAGACGGTGACATTGAGACGGCTATTCAGTCTTGTGCTTCTATGGAGCAAAGGGAATTGCTAGAAGAGCTTGCTGATTCGGTAGGAACTGCAGCACGATAA 1356 44.62 MVFLSAMNNIQMTSSRIVPSIPPQFSPRFNLPNRCLFVRPSRTQKPLTRIVCMAEPYLLKKLDSAEKTWKELSVKLADPDVVSNPSEYQKLAQSMSELDEVVATYRGFKDCEKQLEESKVLSKDPDIDEEMAEMIASEIETLSDQLLMLLIPTDPLDSRNILLEVRAGTGGEEAGLWAADLAERGGYKTYVMEVKGARVYSKLKYESGVHRVQRVPQTETQGRIHTSTATVAIMPEVVTLHLMQLLTTLLVLLKKFDVMRLEFINKVAKLASGAGSDGQGSEQVYPLYIFIAAGSDDGGGYVGDKDDFGRGGGMAGTEAEVVVVGECGTVEALVAEEVDVVIDPKDIDLTTARSGGAGGQNVNKVETAVDLFHKPTGIRIFCTEERSQLKNKTRALQLLRAKLVTDHRLKMNFELTSFLDGDIETAIQSCASMEQRELLEELADSVGTAAR 451
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01332 451 FunFam Peptide chain release factor 1 343 408 - -
Bial10g01332 451 SUPERFAMILY Release factor 333 439 IPR045853 -
Bial10g01332 451 Pfam RF-1 domain 336 407 IPR000352 GO:0003747(InterPro)|GO:0006415(InterPro)
Bial10g01332 451 Gene3D - 52 155 - -
Bial10g01332 451 SMART PCRF-a-2 116 206 IPR005139 GO:0006415(InterPro)
Bial10g01332 451 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 353 369 IPR000352 GO:0003747(InterPro)|GO:0006415(InterPro)
Bial10g01332 451 Gene3D - 184 446 - -
Bial10g01332 451 Gene3D - 157 183 - -
Bial10g01332 451 Pfam PCRF domain 66 182 IPR005139 GO:0006415(InterPro)
Bial10g01332 451 Pfam PCRF domain 183 231 IPR005139 GO:0006415(InterPro)
Bial10g01332 451 Gene3D - 318 404 - -
Bial10g01332 451 PANTHER LD18447P 53 403 IPR050057 GO:0009507(PANTHER)|GO:0009658(PANTHER)|GO:0010027(PANTHER)|GO:0032544(PANTHER)
Bial10g01332 451 SUPERFAMILY Release factor 67 237 IPR045853 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01332 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
182255 Bial10g01332 Bial22g00922
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:13303221 Bial9g00192 Bial-Chr9:2174497 dispersed
Bial Bial-Chr10:13303221 Bial22g00922 Bial-Chr22:8862297 wgd