AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01344 ATGGGGTATTCGTTCCCGGAGGAGGTGTTAGAGCATGTGTTTTCATTTATAACGTTGCATACGGACCGAAACGCTGTTTCGTTGGTGTGCAAGTCATGGTATGAGATAGAGCGGTGGTGCAGGAGGAGGATTTTTATAGGGAATTGTTACGCGGTGAACCCGGGTATTATGATTAGGAGGTTTCCGGAGGTGAGATCTGTGGAGTTGAAAGGGAAGCCGCATTTTGCGGACTTTAATTTGGTGCCGGATGGTTGGGGCGGGTATTTTTACCCGTGGATCTGTGAAATGGCGAGGGTGTATCCGTGGTTGGAGGAGATCAAGCTTAAGAGGATGGTGATTACTGATGAGAGCTTGGAGTTGATTTCGAAGTCGTTTAAGAACTTTAAGGTGTTGGTTTTGTCGTCGTGTGAGGGGTTCAGTACCGATGGACTCGCTGCCATTGCTGCCAATTGCAGAAATCTTCGAGAACTCGATTTGAGGGAGAGTGAAGTGGAAGACTTGAGTGGGCACTGGTTAAGTCATTTTCCTGATTCCTGCACCTCACTGCAATCCCTTAACATGTCTTGTTTATCATCCGAGGTGGGTTTTTCAGCACTCATACGCCTCATTGCCCGCTCACCGAACCTAAAAACTCTTCGACTCAACCGTGCGGTTCCCCTTGAAAAACTTTCCACTCTACTCCACCGGGCGCCACAGCTTGTTGAACTGGGCACTGGTGCATATTCTGCTGAAATTCGACCCGATGTGTTATCAAATTTAACAGAAGCTTTCGCTAAATGCAAAGAACTTGAGGGTCTATCTGGATTTTGGGATGTTGTTCCTTTTTATCTACCGGCTTTTTATTCTGTTTGTTCTAGACTTACTTCCTTAAACTTGAGTTATGCCACTATTCAAAGCCCGGATGTTACCAAAGTCATCACTCAGTGTCCTAATCTGCAGAGTTTATCAGTGTTGGATTACATTGAAGACACCGGGCTTGATGCACTCTCTTTATCGTGTAAAGAGTTAAGAGAACTTAGGGTTTTCCCATCTGACCCGTTTGTGGCTGATGCGAACGTATCGTTAACCGAACAAGGTCTGGTTTCAGTTTCTGAAGGGTGCTCAAAGCTCCAGTCGGTTCTTTACTTCTGCAGACAGATGTCGAACTCTGCATTAACCACGATTGCCAAAAACCGACCTAACCTGATCTGTTTCCGTCTCTGCATTCTCGAGCCACGGGCCCCTGATTACGAAACCCTCGAACCACTTGATCACGGGTTTGGAGCCATAGTTGACCACTGTAAACAGCTTCAACGTCTGTCATTATCCGGTCTGTTAACTGACCGTGTGTTTGAGTACATCGGGAATCGTGCTAAGAAGTTAGAGATGCTTTCGATAGCATTTGCGGGTGATAGTGATTTGGGCCTGCATTATGTGTTATCGGGCTGTGAGAGCTTACGGAAGCTTGAGATTAGAGATTGCCCGTTCGGGGACAAGGCTTTGTTGGCTAATGTTTCCAAATTGGAGACAATGCGATCCCTTTGGATGTCTTCGTGCTCGGTTAGTCTCGGTGCGTGTAAGCAGTTGAGTCAGAAGATGCCTCGTCTTAACGTTGAAGTTATTGACGAGCAGGGGGATCTAGATTCCCGACCTGATAGTTGTCATGTTGAGAAACTTTATGTATATCGCACGGTTGCTGGGCCTCGGTTTGACATGCCTAGTTTTGTACGGACTATGAGTCAGAACCCTGCAAACAGGAGATAG 1743 46.64 MGYSFPEEVLEHVFSFITLHTDRNAVSLVCKSWYEIERWCRRRIFIGNCYAVNPGIMIRRFPEVRSVELKGKPHFADFNLVPDGWGGYFYPWICEMARVYPWLEEIKLKRMVITDESLELISKSFKNFKVLVLSSCEGFSTDGLAAIAANCRNLRELDLRESEVEDLSGHWLSHFPDSCTSLQSLNMSCLSSEVGFSALIRLIARSPNLKTLRLNRAVPLEKLSTLLHRAPQLVELGTGAYSAEIRPDVLSNLTEAFAKCKELEGLSGFWDVVPFYLPAFYSVCSRLTSLNLSYATIQSPDVTKVITQCPNLQSLSVLDYIEDTGLDALSLSCKELRELRVFPSDPFVADANVSLTEQGLVSVSEGCSKLQSVLYFCRQMSNSALTTIAKNRPNLICFRLCILEPRAPDYETLEPLDHGFGAIVDHCKQLQRLSLSGLLTDRVFEYIGNRAKKLEMLSIAFAGDSDLGLHYVLSGCESLRKLEIRDCPFGDKALLANVSKLETMRSLWMSSCSVSLGACKQLSQKMPRLNVEVIDEQGDLDSRPDSCHVEKLYVYRTVAGPRFDMPSFVRTMSQNPANRR 580
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01344 580 SUPERFAMILY RNI-like 66 530 - -
Bial10g01344 580 FunFam Transport inhibitor response 1 1 41 - -
Bial10g01344 580 Pfam Transport inhibitor response 1 protein domain 62 108 IPR041101 -
Bial10g01344 580 Gene3D - 1 41 - -
Bial10g01344 580 FunFam Transport inhibitor response 1 42 572 - -
Bial10g01344 580 PANTHER F-BOX-TPR REPEAT PROTEIN POF3 252 537 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Bial10g01344 580 Gene3D Ribonuclease Inhibitor 42 572 IPR032675 -
Bial10g01344 580 SUPERFAMILY F-box domain 4 38 IPR036047 GO:0005515(InterPro)
Bial10g01344 580 SMART LRR-CC-2 427 450 IPR006553 -
Bial10g01344 580 SMART LRR-CC-2 367 391 IPR006553 -
Bial10g01344 580 SMART LRR-CC-2 309 332 IPR006553 -
Bial10g01344 580 SMART LRR-CC-2 179 202 IPR006553 -
Bial10g01344 580 SMART LRR-CC-2 100 124 IPR006553 -
Bial10g01344 580 SMART LRR-CC-2 125 150 IPR006553 -
Bial10g01344 580 SMART LRR-CC-2 476 500 IPR006553 -
Bial10g01344 580 Pfam F-box 3 43 IPR041567 -
Bial10g01344 580 CDD F-box-AtTIR1-like 4 41 - -
Bial10g01344 580 SMART fbox-2 5 46 IPR001810 GO:0005515(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01344 K14485 transport inhibitor response 1
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:13453070 Bial11g00099 Bial-Chr11:2197425 dispersed
Bial Bial-Chr10:13453070 Bial17g00154 Bial-Chr17:3395027 wgd
Bial Bial-Chr10:13453070 Bial19g02421 Bial-Chr19:59825033 wgd
Bial Bial-Chr10:13453070 Bial22g00937 Bial-Chr22:9013289 wgd
Bial Bial-Chr10:13453070 Bial5g01032 Bial-Chr5:14794744 wgd