AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01361 ATGTTAGTTTTACCCAATAATATTTGGATTGTTGACTCCGGCGAAGAGTGGTACTGGACGTTAACCAAAATATCTGAAATGACGAAAAACCTCGTGAAATACTCCGTCGTGGATGCATTTACAGACAAGCCGTTTAAAGGAAACCCGGCGGCTGTGTGTTGGTTAGACGGCGTACAGAAAGACGATAAGTGGTTGCAATCAGTTGCAACTGAATTTAATATCTCTGAGACGTGTTACTTGACTCCGATTGCTAATCACGATACAGAGAACCCTAGGTTCAATCTTAGGTGGTTCACTCCTGTAGCTGAGGTGGAGCTCTGCGGTCATGCAACTTTAGCAGCCTCACACTTTCTTTTCCAATCTGGATTGGTGAATTCTGACACAGTTGAATACTCAACCCTATCGGGAATTCTAACTGCCAAAAAAATTTTAGCTAACAAGATCAATGGTGAATCTAATGGTGCATTAGAAGACAGCTACTACATAGAATTGGATTTCCCTGTTGTGCCAGTTTCAGATTACAATGTTCTCGAGGTTTCTGCAATTTCAGAAATATTAGATGGTGCTTCGGTTCTTGATGTAAAGAAGAACACACTCGATGACATCTATGTGGAGCTTTCGTCTGCAAAAGAAGTTGAAGAATACAAACCACAGATTAATAAGATTAAGGAATCTCCGGGCCGAGGGATAGTAATTACAGCACGTGCACCTAATGGGTCGGGGTTTGACTTTTATAGTCGATTCTTCTGCCCAAAATTAGGAATTGATGAGGATCCGGTTTGTGGTAGCGCACATTGCGCGTTAGCAGCCTATTGGCATGATAAGTTGGGGAAATGTGATTTTGTTGCATACCAGGCATCACCTAGAAGTGGTGTATTACATGTGCATCTTGATAACGAGAATCAAAGAGTACTTCTTCGAGACGCGTTCACCGACAAGGCGTTTAAAGGAAATCCAGCAGCCGTGTGTTGGTTAGAGGAAGATATTGAGATAAAAGATGATGATAAGTGGTTGCAATCAGTTGCAACTGAATTCAACCTTCCAACTACCGCTTACCTCGTTGAACTGTGTGGTCATGCAACTTTAGCGGCCTCACACTTTCTTTTCCGGTCTGGATTTGTGAATTCTAACACGATTGAATACTCAACTCTATCTGGAGTTTTAACCGCCAAACGAATTCCGGATAACAAGATCAATGGTGAATTAGAAGATAGCTTCTACATAGAATTGGATTTCCCGGTTGTGCCTGTTTCGGATTTCAATGAACTTGAGGTTTTCGCAATTTCGGAGATATTAAACGGTGTTTCTGTTGTTGATGTTCTAATGAACGCGTTTGATGATATCATTGTGGTGCTTTCATCAGGAGAAGAAGTTGCAGACTTGAAGCCTCAGTTTAATAAGATCAAAGCGGCTCCAGGCAGAGGAATAATTATTACAGCACCTGCGCCTAACGGGTCAGGGTTTGACTTTATTTCTCGCTTTTTCTGCCCGAAATATGGAGTTGATGAGGATCCTGTTTGTGGGAGCGCGCATTGCGCTTTGGTAACTTATTGGCATGAGAAGTTGGGGAAATGTGACTTTGTTGCATATCAGGCCTCAAGTAGAAGTGGCATATTACATATACATCTCGATAAAGAGAATCAAAGAGTACTTCTTCGAGGTAAAGCCGCCACAGTCATGGAAGGATCTCTTTTGGTCTAA 1701 42.03 MLVLPNNIWIVDSGEEWYWTLTKISEMTKNLVKYSVVDAFTDKPFKGNPAAVCWLDGVQKDDKWLQSVATEFNISETCYLTPIANHDTENPRFNLRWFTPVAEVELCGHATLAASHFLFQSGLVNSDTVEYSTLSGILTAKKILANKINGESNGALEDSYYIELDFPVVPVSDYNVLEVSAISEILDGASVLDVKKNTLDDIYVELSSAKEVEEYKPQINKIKESPGRGIVITARAPNGSGFDFYSRFFCPKLGIDEDPVCGSAHCALAAYWHDKLGKCDFVAYQASPRSGVLHVHLDNENQRVLLRDAFTDKAFKGNPAAVCWLEEDIEIKDDDKWLQSVATEFNLPTTAYLVELCGHATLAASHFLFRSGFVNSNTIEYSTLSGVLTAKRIPDNKINGELEDSFYIELDFPVVPVSDFNELEVFAISEILNGVSVVDVLMNAFDDIIVVLSSGEEVADLKPQFNKIKAAPGRGIIITAPAPNGSGFDFISRFFCPKYGVDEDPVCGSAHCALVTYWHEKLGKCDFVAYQASSRSGILHIHLDKENQRVLLRGKAATVMEGSLLV 566
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01361 566 Pfam Phenazine biosynthesis-like protein 37 306 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Bial10g01361 566 Pfam Phenazine biosynthesis-like protein 354 562 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Bial10g01361 566 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 32 307 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Bial10g01361 566 NCBIfam PhzF family phenazine biosynthesis isomerase 34 276 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Bial10g01361 566 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 168 306 - -
Bial10g01361 566 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 414 554 - -
Bial10g01361 566 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 308 562 - -
Bial10g01361 566 SUPERFAMILY Diaminopimelate epimerase-like 303 565 - -
Bial10g01361 566 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 34 167 - -
Bial10g01361 566 SUPERFAMILY Diaminopimelate epimerase-like 33 306 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01361 K06998 trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:13613126 Bial10g01361 Bial-Chr10:13629557 dispersed
Bial Bial-Chr10:13629557 Bial22g00956 Bial-Chr22:9213368 dispersed
Bial Bial-Chr10:13621964 Bial10g01361 Bial-Chr10:13629557 proximal