AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01370 ATGAAGAAATTGCAACATGGAATATTCTTCGAATCGAAAACCCAACGTCTATTTAACCCCCACCCCGCAATAATAATAATAAGTCATCACCCTCCCTTTACCATCTGCGTTGAATATTTCATTTCGTCATCAATCAACCCAAACCCTAACCCCCAAATTCGACCAAATTGCAGTCAAATTATGGGCCAGCCGTGTACGGAGCCATCGGGTCCATCCACATCGTCATCGATCACCGAAACAGTGAACGGCGAGCACGATTTCCGGATCTCGGGTTATTCGTTTCTAAAGGGTTTAGGGATCGGTAAATACGTGGCGTCTGATACGTTTAACGTTGGTGGGTATTCATGGGCGGTGTATTTTTACCCGGATGGTAAGAGTACGGAGGATAACGCTAGTTATGTGTCGTTGTTTATTGCGTTGGCGAGTGACGGGTCGGATGTTCGGGCGTTGTTTGAGTTGACTTTGATTGACCAGAGTGGGAATGAGAGGCATAAGGTTCATACTCATTTCGGTAGAGCGTTGGAGAGCGGGCCGTATACGCTTAAGTACCGCGGGAGTATGTGGGGATACAAGCGTTTTTTCAAAAGATCTACTTTAGAAGGATCAGACTATCTAAAAGACAACTGCCTTCAAGTTCATTGCTGTGTTGGCGTTGTCCGGTCCCACACAGAGGGTCCTAAATCCTACTCTATTCATGTGCCCCCTTCTGATATCGGGCAGCACTTCGGGCAACTTCTTGAGTGTGGAAAGGGCACTGATGTTTCCTTTGAAGTAAATGGAGAAACCTTTGCTGCCCATAAATTGGTTCTTGCAGCCCGCTCACCAGTTTTCCGGGCCCAACTTTTTGGCCCAATGAAAGACCCAAATTCCCATTGCATCAAAGTTGAAGACGTCGAAGCCCCTGTTTTTAAGGCATTACTTCATTTTATATACTGGGATAAACTGCCCGACATGGAAGAGTTAACGGGCCTGAATACAAAATGGGCTTCAACATTGATGTATCAGCATTTGCTTGCAGCTGCTGACCGATACGGGTTAGAGAGGCTTTGTATTTTATGTGAATCTAATCTATGTGAAGATGTTGCCATTAATACAGTTGCCACAACATTAGCATTGGCTGAACAACATCATTGTCTTCAGTTGAAATCCGTGTGTCTTAAGTTTGTTTCTTTGCCCGAGAATCTCAGAGCTGTGATGCAGACAGACGGTTTTGACTACTTAAAAGAAAGCTGCCCGCATGTGTTGACTGAGCTACTGGAACACGTGGCCAGAAACAACGAGCATTCTCTAGCGGTTTGCAGTCACCCAAATGCGATCATACTCGACGGAAGTGATGTTCATGGTAGACGGGTTAAACCCAGGCTGTAG 1368 45.61 MKKLQHGIFFESKTQRLFNPHPAIIIISHHPPFTICVEYFISSSINPNPNPQIRPNCSQIMGQPCTEPSGPSTSSSITETVNGEHDFRISGYSFLKGLGIGKYVASDTFNVGGYSWAVYFYPDGKSTEDNASYVSLFIALASDGSDVRALFELTLIDQSGNERHKVHTHFGRALESGPYTLKYRGSMWGYKRFFKRSTLEGSDYLKDNCLQVHCCVGVVRSHTEGPKSYSIHVPPSDIGQHFGQLLECGKGTDVSFEVNGETFAAHKLVLAARSPVFRAQLFGPMKDPNSHCIKVEDVEAPVFKALLHFIYWDKLPDMEELTGLNTKWASTLMYQHLLAAADRYGLERLCILCESNLCEDVAINTVATTLALAEQHHCLQLKSVCLKFVSLPENLRAVMQTDGFDYLKESCPHVLTELLEHVARNNEHSLAVCSHPNAIILDGSDVHGRRVKPRL 455
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01370 455 CDD BTB-POZ-BPM-plant 238 358 - -
Bial10g01370 455 FunFam BTB-POZ and math domain 1 228 355 - -
Bial10g01370 455 ProSiteProfiles MATH-TRAF domain profile. 82 216 IPR002083 GO:0005515(InterPro)
Bial10g01370 455 SMART BTB-4 252 361 IPR000210 GO:0005515(InterPro)
Bial10g01370 455 SUPERFAMILY TRAF domain-like 79 218 - -
Bial10g01370 455 Pfam BTB-POZ domain 242 359 IPR000210 GO:0005515(InterPro)
Bial10g01370 455 CDD MATH 83 216 IPR002083 GO:0005515(InterPro)
Bial10g01370 455 SMART math-3 87 199 IPR002083 GO:0005515(InterPro)
Bial10g01370 455 Gene3D Potassium Channel Kv1.1; Chain A 228 356 IPR011333 -
Bial10g01370 455 PANTHER BTB-POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 73 423 IPR045005 GO:0016567(InterPro)
Bial10g01370 455 CDD BACK-AtBPM-like 358 420 IPR034090 -
Bial10g01370 455 Gene3D - 361 436 - -
Bial10g01370 455 ProSiteProfiles BTB domain profile. 252 319 IPR000210 GO:0005515(InterPro)
Bial10g01370 455 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 81 220 IPR008974 GO:0005515(InterPro)
Bial10g01370 455 SUPERFAMILY POZ domain 229 359 IPR011333 -
Bial10g01370 455 Pfam MATH domain 85 216 IPR002083 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01370 K10523 speckle-type POZ protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
361570 Bial10g01370 Bial12g02770
361571 Bial10g01370 Bial24g02613
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:13699504 Bial24g02612 Bial-Chr24:56862205 dispersed
Bial Bial-Chr10:13699504 Bial12g02769 Bial-Chr12:57755961 wgd
Bial Bial-Chr10:13699504 Bial22g00964 Bial-Chr22:9271915 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Bial BTB 7.6e-25 CL0033 TR TRAF