AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01375 ATGGCAGTGGCAGCCGGAGTGGCAGATAGAGCGCCGGTGATGATGCCGGAGGCATTTGCAAAGGACGCGATAATCTCATGGTTCCGAGGCGAGTTTGCGGCTGCGAACGCGATCATTGACGCTTTGTGCGGTCATTTGTCGCAGTTTGAAGGCGGACGAACCGAGTACGAATCGGTGTTCGCGGCCATACATCGACGCAGGTTGAATTGGATCCCGATCTTACAGATGCAGAAGTTTTTCTCGATCGCTGATGTCACTCAAGAGCTTCAGAAAGTGGTGGAACATAAGGAGAAATTGAAGTTTGCTGATGGAAATGTTTCGGCAGCCGCGGTTGAGGAGCTTTCAAATATGGATGGTAATATTATTAATGGTAATGATGGTGGTGAGGTTGTTGATGATAATTCGCCCAAGAGTGGGATAACAGATGCAGGATTACAAGAAGTGGATACACCTGTCGAAAGCGTTGAAATATGCTCAAACGAAGAAGAATGGGAGGCGCGGCGTGCTGAGATCAAGATGACAAAAGGGTTCATAGCCAAGGAGTCTGTAAAAGGACATATGGTGAATGTTGTGAGAGGTTTGAAGTTGTACGAAGACATACTTAACACGACAGAGCTAGCTAAGTTGGCCGAGTTTGTAACTGAGCTTCGAGTCGCTGGCCAAAATGGTGAACTCTCAGGTGAGACTTTTATTATGTACAACCAGCAATCAAAGGCAATCAAAAGAGAGCTTATTCAGTTTGGAGCTCCAATATTTGGACAAGTAAAAGATGAAGCTACAAATAATAAATCCCAAGATAGCAATATCGAGCCGATTCCTGCTCCTCTTGAAGGTGTTATCGACCATCTCATCCAGTTTCACTTAATTTCTGAAAACAGGCGACCAAACAGCTGCATTATAAACTTTTTTGACGAGGGGGAGTTTTCACAACCTTTCTTGAAACCACCTCATCTAGAGCAACCTATGGTTACACTTGTTCTATCTGATTCAACAATGGCTTTCGGACGCACTTTAGTATGCGATAATGATGGAAATTACAAAGGACCACTCATGCTTTCTCTCAAGGAAGGGTCACTCTTAGTGATGAGAGGAAACAGTGCTGACATGGCCCGCCACGTCATGTGTCAATCTCCAACTAAACGAATAAGTGTATCGTTTTTCAAAGTCCGAATAGACACTTATGACAAAAATTTAGCCCCAAAAGATCCAATGAGCGGGGCCATGACCCTTTGGCAACCCGGCCTTACAACTCCACTAATGACACCTGTTGCAACCGGGCCACTAGACGGGTTTGACTCAATCCATGTTCTTCCCAAGTGGGGTGCAATGCGGGCCCCACAACTGCTAATGCTAGCACCAGTTCGACCCATGGTTATGAGCCCTAGAAGACTTCCACGTGGTGGAACTGGTGTTTTCTTGCCATGGAATGGGGGGTCTAAAAAACCTGCTAAGCATTTACCGCCTCGTGCTCAACGAGGGCGTCTTCTTGCGTTGCATGCATCAACTGAGGCACATAAGTTGGATCGAACCGCTGAGTCGGGCATTAGTGTGGCTTGA 1557 46.44 MAVAAGVADRAPVMMPEAFAKDAIISWFRGEFAAANAIIDALCGHLSQFEGGRTEYESVFAAIHRRRLNWIPILQMQKFFSIADVTQELQKVVEHKEKLKFADGNVSAAAVEELSNMDGNIINGNDGGEVVDDNSPKSGITDAGLQEVDTPVESVEICSNEEEWEARRAEIKMTKGFIAKESVKGHMVNVVRGLKLYEDILNTTELAKLAEFVTELRVAGQNGELSGETFIMYNQQSKAIKRELIQFGAPIFGQVKDEATNNKSQDSNIEPIPAPLEGVIDHLIQFHLISENRRPNSCIINFFDEGEFSQPFLKPPHLEQPMVTLVLSDSTMAFGRTLVCDNDGNYKGPLMLSLKEGSLLVMRGNSADMARHVMCQSPTKRISVSFFKVRIDTYDKNLAPKDPMSGAMTLWQPGLTTPLMTPVATGPLDGFDSIHVLPKWGAMRAPQLLMLAPVRPMVMSPRRLPRGGTGVFLPWNGGSKKPAKHLPPRAQRGRLLALHASTEAHKLDRTAESGISVA 518
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01375 518 Gene3D - 178 394 IPR037151 -
Bial10g01375 518 SUPERFAMILY Clavaminate synthase-like 186 386 - -
Bial10g01375 518 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 18 505 IPR044842 GO:0003729(InterPro)|GO:0006402(InterPro)|GO:0032451(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01375 K10767 mRNA N6-methyladenine demethylase [EC:1.14.11.53]
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Event-related genes

Select Gene_1 Gene_2 Event_name
24038 Bial10g01375 Bial17g00173
361576 Bial10g01375 Bial12g02775
361577 Bial10g01375 Bial24g02617
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:13791936 Bial16g00864 Bial-Chr16:10880631 dispersed
Bial Bial-Chr10:13791936 Bial12g02775 Bial-Chr12:57810650 wgd
Bial Bial-Chr10:13791936 Bial22g00968 Bial-Chr22:9374184 wgd
Bial Bial-Chr10:13791936 Bial24g02617 Bial-Chr24:56931218 wgd