AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01391 ATGGAGTCACCTCACAGCCACATGCGTTCAATCAAGCTATGGCCACCTAGCCACAGCACGAGGTTATTGCTCGTCGAGCGCATAATAAGAAACCTCACAACACCATCAATATTATCAAGAAAATACGGTTTGTTAAGTAAAGAAGAAGCCGAAGAAGAGGCCAAACTAATCGAATCAGCAGGGTATAATGCAGCTACCCAACACTTTGAAAAAGATCCGCAAACTGACGGTGGATCAGCAGTTCAAGTTTATGCCAAAGAAGCTAGTAGACTAATGGTGGAATTCATCAAAACCGGGCCCAAACCGAAAGAACATAGAGAAAGTGTGCCGGAAATAATCGCATCAGATCATGTTTTCGATATTTCTGGTGGTCGTCGCGCGTTTATTGAGGCGGAAGAAGCGAAGGAGCTGTTAAAACCGTTAAAAGAGCCTGGAAACAAGTTTACAAAAATATGTTTTAGTAACCGAAGCTTTGGGTTACCCGCAGCCCACGTGGCTGCATCGGTTTTGTCTAGTGTTAAAGATCAGTTGACCGAAGTTGACTTATCGGACATTGTGTCGAGGAGGCCCGAGCCTGAAGCGGTTGAGGTTATGAGGATGTTTTCGTCGGCTCTTGAAGGGTGTGGGTTGAGTTATTTGAATTTGTCTAATAATGTGTTGAATGAAAAAGGGGTTAGGGCATTTGGGGGTCTTTTGAAGTCTCAAAGTAATCTTGTGGAGTTGTATTTGGAGAATGCTGGGATCTCACCCGAGGCTGCGAAGGCGGTTTGCGAGTTGGTTCCCACGACTAGTAAACTTAAGCTTCTTCATTTCCATCATAATAAAACAGGGGATGAAGGTGCGGTCGCAATTTCTAAACTCGTGAAAGGGTGTCCGAATCTCGAGGATTTCAGGTGTTCGTCCACACGGGTCGGGTCAGTAGGAGGAATGGCTCTAGCAGAAGCCCTTAAAACATGTACACTTTTAAAGAAACTCGACTTACGTGACAACATGTTTGGACCAAAAGCCGGTGTCACATTGAGTAATAGCCTATCCGTGCACACTAATATCACTGAAATTTACTTAAGTAACATGAATTTAGAAAACGAGGGTGTGATCGCAATAGCAAACGCACTAAAAACTTCGAACTCAGCCCTTGAAATCATCGAGATGGCAGGAAACAACATCAGTTCTGAAGCAGCAAATGCTTTAGCAGATTGCATAGTTTCAAAGAAACATTCTATAACCAAAATAAACTTATCCGAGAATGAACTAAAAGATGAAGGTGCCATCGTGATTGCAAAGGCGCTCGAAGGCGAGTTTGGACGATTATGTATCGTTGATATGAGTGCAAACAAGATCAAAACAGATGGAGCTATGGCATTGGCTAAAGCAGTTGTGGGTAAATTCGGGTTTCGGTTGTTGAATATTAATGGAAACTTGTTATCCAATAAAGGAATTGAAGGTGTGAGAGAGATCTTCAAGAGCTTCCCGCGTATGCTCGGGCCATTCGATGAGAATGATCCTCATGGTGAGGATGGTTCTAATGAGGTTGAATCAAAGCTGAAAGATGTTGAAAAGAAGCAAAAAGAATAG 1575 43.05 MESPHSHMRSIKLWPPSHSTRLLLVERIIRNLTTPSILSRKYGLLSKEEAEEEAKLIESAGYNAATQHFEKDPQTDGGSAVQVYAKEASRLMVEFIKTGPKPKEHRESVPEIIASDHVFDISGGRRAFIEAEEAKELLKPLKEPGNKFTKICFSNRSFGLPAAHVAASVLSSVKDQLTEVDLSDIVSRRPEPEAVEVMRMFSSALEGCGLSYLNLSNNVLNEKGVRAFGGLLKSQSNLVELYLENAGISPEAAKAVCELVPTTSKLKLLHFHHNKTGDEGAVAISKLVKGCPNLEDFRCSSTRVGSVGGMALAEALKTCTLLKKLDLRDNMFGPKAGVTLSNSLSVHTNITEIYLSNMNLENEGVIAIANALKTSNSALEIIEMAGNNISSEAANALADCIVSKKHSITKINLSENELKDEGAIVIAKALEGEFGRLCIVDMSANKIKTDGAMALAKAVVGKFGFRLLNINGNLLSNKGIEGVREIFKSFPRMLGPFDENDPHGEDGSNEVESKLKDVEKKQKE 524
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01391 524 Gene3D WPP domain 10 108 IPR038214 -
Bial10g01391 524 MobiDBLite consensus disorder prediction 497 524 - -
Bial10g01391 524 Gene3D Ribonuclease Inhibitor 117 524 IPR032675 -
Bial10g01391 524 SMART LRR-RI-2 462 489 - -
Bial10g01391 524 SMART LRR-RI-2 207 234 - -
Bial10g01391 524 SMART LRR-RI-2 376 403 - -
Bial10g01391 524 SMART LRR-RI-2 291 318 - -
Bial10g01391 524 SMART LRR-RI-2 319 346 - -
Bial10g01391 524 SMART LRR-RI-2 235 262 - -
Bial10g01391 524 SMART LRR-RI-2 347 374 - -
Bial10g01391 524 SMART LRR-RI-2 405 432 - -
Bial10g01391 524 SMART LRR-RI-2 263 290 - -
Bial10g01391 524 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 3 518 IPR045203 GO:0005096(InterPro)
Bial10g01391 524 MobiDBLite consensus disorder prediction 498 524 - -
Bial10g01391 524 Pfam WPP domain 10 105 IPR025265 -
Bial10g01391 524 SUPERFAMILY RNI-like 128 515 - -
Bial10g01391 524 Pfam Leucine Rich repeat 405 427 IPR001611 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01391 K14319 Ran GTPase-activating protein 1
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Event-related genes

Select Gene_1 Gene_2 Event_name
24043 Bial10g01391 Bial16g00884
24044 Bial10g01391 Bial4g01040
361585 Bial10g01391 Bial12g02710
361586 Bial10g01391 Bial24g02553
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:13955479 Bial12g02710 Bial-Chr12:57299723 dispersed
Bial Bial-Chr10:13955479 Bial16g00884 Bial-Chr16:11119567 wgd
Bial Bial-Chr10:13955479 Bial22g00982 Bial-Chr22:9607734 wgd
Bial Bial-Chr10:13955479 Bial24g02553 Bial-Chr24:56363121 wgd
Bial Bial-Chr10:13955479 Bial4g01040 Bial-Chr4:12804721 wgd