AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01396 ATGCTTAAATCCTCTTCTTTGTGTCAAATTGTTTATAAGAAGCTTAAGGAGAGGTCAGATGAATATATTGCACGAGGTTTGGTTAGAAGTGATGAGAGTAAGCAGAAAATCGGCGGAGCCGACGATGTTTTGATCGGAGATATAACTGACGCAGGAAGTATTGTTCCGGCTATTGACGGCACAGATGCTATTGTTATTCTTACCAGTGCTGTGCCCAAAATGAAACCTGGTTTTGATCCAACTAAAGGTGGAAGACCTGAATTCTACTTTGAAGAGGGACAATATCCTGAACAAGTTGATTGGGAAGGACAAAAGAATCAAATAGATGCTGCTAAAGCTGCTGGAGTGAAGCACATTGTGCTGGTTGGGTCAATGGGTGGAACAAATATTAACCATCCTTTGAACAGCCTCGGAAACGGGAATATACTGGTTTGGAAGAGAAAGGCTGAACAATATCTAGCAGATTCTGGGATTCCATACACCATTATAAGGGCCGGGGGTTTACAAGACAAGGAAGGTGGTGTTCGAGAACTTCTTGTCGGGAAAGATGATGAGCTCCTTCAGACTGAAACTAGAACCATTGCCCGAGCAGATGTGGCTGAAGTCTGTATCCAGGCGTTGAAATATGAGGAGGCGAAGTTTAAGGCATTTGATCTTGCCTCCAAACCTGAGGGAAGTGGAACCCCGACAAAAGACTTCAAGAGCTTATTTGCCCAGATCACTACTCGGTTTCCTTATGATGGGGGTCTCATGTTCGAGATTCAAACTTGGGTAATGAAGAGTACTTTCGGCGACGGCGGTGGTTGTAATGGCGCCGCCGGAGTATTCGCCGGAGGTGTCGCCGGAGTAGTTACTGGAGATTTCGCTGGAGGTGTCGCCGGAGTAGTTACTGGAGATTTCGCTGGAGGTGTCGCCGGAGTAGTTACTGGAGATTTCGCCGGAGGGGTCACCGGAGATTTGGCTGGAGTAATTTCCGGAGATTTCGCCGGAGATGTCACTGGAGTTTTCGCCGGAGTTGGTGCCGGTGCCGGAGCAAAGGGTTGTGGGTATGGGAACGGAAGTGGTTGA 1068 47.57 MLKSSSLCQIVYKKLKERSDEYIARGLVRSDESKQKIGGADDVLIGDITDAGSIVPAIDGTDAIVILTSAVPKMKPGFDPTKGGRPEFYFEEGQYPEQVDWEGQKNQIDAAKAAGVKHIVLVGSMGGTNINHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGVRELLVGKDDELLQTETRTIARADVAEVCIQALKYEEAKFKAFDLASKPEGSGTPTKDFKSLFAQITTRFPYDGGLMFEIQTWVMKSTFGDGGGCNGAAGVFAGGVAGVVTGDFAGGVAGVVTGDFAGGVAGVVTGDFAGGVTGDLAGVISGDFAGDVTGVFAGVGAGAGAKGCGYGNGSG 355
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01396 355 Gene3D - 5 244 - -
Bial10g01396 355 FunFam Uncharacterized protein At5g02240 3 244 - -
Bial10g01396 355 CDD SDR-a5 11 219 - -
Bial10g01396 355 PANTHER NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED 8 244 IPR044163 GO:0009507(PANTHER)|GO:0016491(InterPro)
Bial10g01396 355 Pfam NAD(P)H-binding 11 208 IPR016040 -
Bial10g01396 355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 222 IPR036291 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01396 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:14031350 Bial10g02297 Bial-Chr10:25082405 dispersed
Bial Bial-Chr4:81033588 Bial10g01396 Bial-Chr10:14031350 transposed
Bial Bial-Chr10:14031350 Bial22g00987 Bial-Chr22:9650999 wgd