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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01418 ATGACAATGACCGCCGTCGACGTGGACACATTGATGTCCGATTTCCTCCGGAAGTCCGGCGGTGTAGCGTTAATCGACGGAGGACTTGCGACGGAGCTTGAACGGTACGGCGCCGACCTTAACGATCCTCTATGGAGCGCTAAATGTCTCCTCACTTCTACTCACCTTATTCGTCAGGTACACCTTGATTATCTTGAAGCTGGTGCAGATATAATAATCACAGCATCTTACCAGGCCACAATTCAAGGGTTTGAGGCTAAAGGCTATTCCACAGAAGTTGGTGAGTCTATGCTTAGAAAGAGTGTAGAGATTGCATGTGAAGCAAGGGATTTATATCTCCAAAGATGCCATGAATCTTCTGTTGATTGTACTGGTGATGGTAGGATTTTCAAAACTCGTCCCATTTTAGTTGCTGCATCTGTTGGGAGTTATGGGGCTTATCTTGCCGATGGTTCTGAATACAGTGGGGACTATGGTGATGCAATGAATTTGGAATTCTTGAAAAATTTTCACAGAAGAAGGGTCCAAGTTTTAGCTGAATCTGGTGCTGATTTGATAGCATTTGAAACAATTCCAAATAAGCTAGAAGCACAGGCATTTTGTGAGCTTCTTGAAGAAGGCATTAATATTCCTGCATGGTTTGCATTTAACTCCAAAGATGGTGTGAATGTTGTGAGTGGGGATTCTTTATCCGAATGTGCCGCAATTGCTGATTCATGCAAGAAAGTGGTTTCTGTAGGAATCAACTGCACCCCTCCTAGATTCATTGGTGGATTGATTTCCACAATAAAAAAGGTGACAAATAAACCAATCCTTATATATCCTAACAGTGGTGAAAGCTATGATGGTCAACTAAAACAATGGGTGCAAAACACTGGAGTTCTAGAAGAGGATTTTGTTTCATATGTGAACACATGGTGTGAGATGGGTGCATCACTTGTTGGAGGATGTTGTAGAACTACACCTGACACAATTAGAGCCATTCACAAAATTCTTCCAAGCAGATCGGTCTCTACACCTGTCGTTGAAGCCCTTCAAAGTGAGTCGGGACGTGTGATGATCAAAACCGCATAG 1074 42.92 MTMTAVDVDTLMSDFLRKSGGVALIDGGLATELERYGADLNDPLWSAKCLLTSTHLIRQVHLDYLEAGADIIITASYQATIQGFEAKGYSTEVGESMLRKSVEIACEARDLYLQRCHESSVDCTGDGRIFKTRPILVAASVGSYGAYLADGSEYSGDYGDAMNLEFLKNFHRRRVQVLAESGADLIAFETIPNKLEAQAFCELLEEGINIPAWFAFNSKDGVNVVSGDSLSECAAIADSCKKVVSVGINCTPPRFIGGLISTIKKVTNKPILIYPNSGESYDGQLKQWVQNTGVLEEDFVSYVNTWCEMGASLVGGCCRTTPDTIRAIHKILPSRSVSTPVVEALQSESGRVMIKTA 357
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01418 357 PANTHER ZGC:172121 14 333 IPR051486 GO:0008898(PANTHER)|GO:0009086(PANTHER)|GO:0033528(PANTHER)
Bial10g01418 357 FunFam Homocysteine S-methyltransferase 12 331 - -
Bial10g01418 357 PIRSF BHMT 289 353 IPR017226 GO:0008168(InterPro)|GO:0008270(InterPro)|GO:0009086(InterPro)
Bial10g01418 357 PIRSF BHMT 12 120 IPR017226 GO:0008168(InterPro)|GO:0008270(InterPro)|GO:0009086(InterPro)
Bial10g01418 357 PIRSF BHMT 136 247 IPR017226 GO:0008168(InterPro)|GO:0008270(InterPro)|GO:0009086(InterPro)
Bial10g01418 357 Gene3D - 12 330 IPR036589 -
Bial10g01418 357 SUPERFAMILY Homocysteine S-methyltransferase 19 335 IPR036589 -
Bial10g01418 357 Pfam Homocysteine S-methyltransferase 24 331 IPR003726 -
Bial10g01418 357 ProSiteProfiles Homocysteine-binding domain profile. 11 332 IPR003726 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01418 K00547 homocysteine S-methyltransferase [EC:2.1.1.10]
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Event-related genes

Select Gene_1 Gene_2 Event_name
24062 Bial10g01418 Bial17g00233
24063 Bial10g01418 Bial5g00960
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:14237345 Bial2g03094 Bial-Chr2:82455795 dispersed
Bial Bial-Chr10:14237345 Bial17g00233 Bial-Chr17:4214407 wgd
Bial Bial-Chr10:14237345 Bial5g00960 Bial-Chr5:13711988 wgd