AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01422 ATGGAGAATTATGAGATATTAGAACAGATTGGTAAAGGATCTTTTGCTTCTGCTCTGCTTGTCAGGCATAAACATGAAAAGAAAAAGTATGTTTTGAAGAAGATTCGACTTGCTCGTCAGACTGATAGGATCCGCAGATCTGCTCTATTGGAGATGGAACTTATCTCCACTGTACAAAATCCTTTCATCGTTGAGTACAAAGATTCATGGGTTGAAAAGGGTTGTTATGTGTGCATTGTTATAGCATACTGTGAAGGAGGAGATATGGCGGAAGCAATAAAAAAAGCCAACGGTGTTCATTTTCCAGAAGAGAAACTCTGCAAATGGCTCGTTGAACTACTTGTGGCACTTGATTATTTGCATGTTAATCATATTATTCATCGTGATGTCAAGTGTTCAAATATATTTCTAACACGAGATCAAGATATCCGACTTGGTGATTTCGGTCTTGCAAAAATGTTGACTGCTGATGATCTTGCATCCTCGGTTGTAGGAACTCCTAGCTATATGTGCCCTGAACTTCTTGCAGATATACCTTATGGTTCAAAGTCAGACATATGGTCACTAGGATGCTGCATGTATGAAATGACCGCGTTCAAGTCTGCATTTAAAGCTTTTGACATGCAGTCGTTAATCAATAAAATAAATAAATCCATAGTGTCTCCACTCCCAACCATGTATTCCGGCACATTCCGAGGGCTTATCAAGAGTATGCTGCGGAAAAACCCAGAAATGAGACCAAGCGCTGCTGATTTGCTCAAACATTCACATCTTCAACCTTATGTACTTAAACTCCATCTTAACATGAACGGGCCTAGACGCCATACACTTCCAGCCCAGTGGCCCGATTACAACTACGAAAAGAAAACCTCGTTCATTGAGCCCGAAGCCCGACCCGTGAATATACACAACGGGAAAAGACCGTCTTTTAGCAGTGATAGGGGTTTGAATCCCAGTGTATCTGAACATGATCAATATTCTTCGTGTTCACAAGGTTCAAGAAAGTTATCGATTGGTAGTGTTGAAGAGTATATACAAACCGAGAAGTTAGTAGCTGCCAGGTCAGCAAATGCTGTTAGAACTCCTCGAGTCACTCCTGTAAAATGTTCTCCCAGAAGACAAATTGCTTCACCGAATATAATAAGGAGTTCGGATCGTGATGTGCTTCCAGTATCACATACACCAGCCAGCATATCGTCACGAACAACTCGTCGGGCATCTCTACCCTTATCAACCCGGGTCACGAAACCACATTTGGGTTTTGAATCACCTGATGTATCAGTCAACGCTCCACGCATCGACAAAATGACTGAACTACCCTTAACCTACACACAACAACCCGTTATCCTACCAGCCCGTAAAACTTCCTCAACATCCGCTCAATGCTCTTCCGCGACTTCCTCAAACACCATCCAAGACCGGTCTGTTACGATTGACACGTGTACAGTTAAGACCATTAACCAAACAAGCGCCAGTGGGGCCCACTCGACAAACAATAAGAGTGATGACACGTCATCAGACTCACGGAGGCGTCGGTTTGACACATCATCGTACCAACAACGAGCTGAGGCGTTAGAAGGGTTGTTGGAGTTTAGTGCACAACTTATGCAGCAACAACGGATAGAAGAGTTGGCGGTTTTGTTGAAACCGTTTGGGCCCGAAAAGGTGTCGCCTAGAGAAACCGCAATTTGGTTGTCAAAGAGCTTGAAGAGAACCGGGGCCGTGACAGGAACCGGGGTTAGTGTTGTGGGGAATTTGTAG 1761 43.73 MENYEILEQIGKGSFASALLVRHKHEKKKYVLKKIRLARQTDRIRRSALLEMELISTVQNPFIVEYKDSWVEKGCYVCIVIAYCEGGDMAEAIKKANGVHFPEEKLCKWLVELLVALDYLHVNHIIHRDVKCSNIFLTRDQDIRLGDFGLAKMLTADDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCMYEMTAFKSAFKAFDMQSLINKINKSIVSPLPTMYSGTFRGLIKSMLRKNPEMRPSAADLLKHSHLQPYVLKLHLNMNGPRRHTLPAQWPDYNYEKKTSFIEPEARPVNIHNGKRPSFSSDRGLNPSVSEHDQYSSCSQGSRKLSIGSVEEYIQTEKLVAARSANAVRTPRVTPVKCSPRRQIASPNIIRSSDRDVLPVSHTPASISSRTTRRASLPLSTRVTKPHLGFESPDVSVNAPRIDKMTELPLTYTQQPVILPARKTSSTSAQCSSATSSNTIQDRSVTIDTCTVKTINQTSASGAHSTNNKSDDTSSDSRRRRFDTSSYQQRAEALEGLLEFSAQLMQQQRIEELAVLLKPFGPEKVSPRETAIWLSKSLKRTGAVTGTGVSVVGNL 586
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01422 586 FunFam Serine-threonine-protein kinase Nek2 84 274 - -
Bial10g01422 586 CDD STKc-Nek 3 258 - -
Bial10g01422 586 MobiDBLite consensus disorder prediction 393 410 - -
Bial10g01422 586 Gene3D Transferase(Phosphotransferase) domain 1 84 269 - -
Bial10g01422 586 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Bial10g01422 586 MobiDBLite consensus disorder prediction 489 517 - -
Bial10g01422 586 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Bial10g01422 586 SUPERFAMILY Protein kinase-like (PK-like) 1 321 IPR011009 -
Bial10g01422 586 ProSitePatterns Serine-Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Bial10g01422 586 MobiDBLite consensus disorder prediction 502 517 - -
Bial10g01422 586 MobiDBLite consensus disorder prediction 390 423 - -
Bial10g01422 586 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524(InterPro)
Bial10g01422 586 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Bial10g01422 586 MobiDBLite consensus disorder prediction 305 332 - -
Bial10g01422 586 SMART serkin-6 4 258 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Bial10g01422 586 PANTHER SERINE-THREONINE-PROTEIN KINASE NEK 4 540 IPR050660 GO:0004674(PANTHER)
Bial10g01422 586 MobiDBLite consensus disorder prediction 300 332 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01422 K08857 serine/threonine-protein kinase Nek1/4/5 [EC:2.7.11.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
24064 Bial10g01422 Bial16g00918
24065 Bial10g01422 Bial4g01092
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:14308823 Bial19g01082 Bial-Chr19:43117181 dispersed
Bial Bial-Chr9:55167394 Bial10g01422 Bial-Chr10:14308823 dispersed
Bial Bial-Chr10:14308823 Bial16g00918 Bial-Chr16:11451451 wgd
Bial Bial-Chr10:14308823 Bial4g01092 Bial-Chr4:13201320 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bial14g00188 . 1 341 MAP Kinase Kinase gene family AT3G21220 72.034 1.53e-171 481.0
Bial2g00036 ACH,BST,WGDA 1 354 MAP Kinase Kinase gene family AT4G29810 67.797 0.0 520.0
Bial2g00465 . 1 341 MAP Kinase Kinase gene family AT3G21220 71.751 3.26e-172 481.0
Bial8g02573 . 143 251 MAP Kinase Kinase gene family AT1G51660 77.064 1.19e-53 171.0
Bial24g00126 . 84 213 MAP Kinase Kinase gene family AT1G51660 27.481 3.32e-09 57.8
Bial3g03741 . 1 307 MAP Kinase Kinase gene family AT1G73500 63.462 3.17e-136 386.0
Bial3g03463 . 1 342 MAP Kinase Kinase gene family AT3G21220 71.92 1.46e-175 489.0
Bial12g03723 . 37 350 MAP Kinase Kinase gene family AT4G29810 30.284 8.64e-42 152.0
Bial15g03527 BST,WGDA 1 354 MAP Kinase Kinase gene family AT4G29810 69.209 0.0 529.0
Bial15g03476 BST,WGDA 8 354 MAP Kinase Kinase gene family AT5G56580 82.709 0.0 608.0
Bial3g04010 ACH,BST,WGDA 1 354 MAP Kinase Kinase gene family AT4G29810 69.492 0.0 534.0
Bial3g03957 BST,WGDA 8 348 MAP Kinase Kinase gene family AT5G56580 57.391 1.31e-123 359.0
Bial19g01693 ACH,BST,WGDA 1 516 MAP Kinase Kinase gene family AT5G40440 78.682 0.0 862.0
Bial19g02590 ACH,BST,WGDA 19 337 MAP Kinase Kinase gene family AT1G51660 68.536 1.59e-154 436.0
Bial10g01884 . 67 333 MAP Kinase Kinase gene family AT4G29810 30.996 3.28e-37 141.0
Bial10g01422 ACH 67 333 MAP Kinase Kinase gene family AT4G29810 30.996 4.96e-35 134.0
Bial7g01564 ACH,BST,WGDA 1 516 MAP Kinase Kinase gene family AT5G40440 78.876 0.0 867.0
Bial7g02583 ACH,BST,WGDA 19 337 MAP Kinase Kinase gene family AT1G51660 68.536 2.52e-154 436.0
Bial8g02614 . 143 251 MAP Kinase Kinase gene family AT1G51660 77.064 1.19e-53 171.0
Bial14g01159 BST,WGDA 91 336 MAP Kinase Kinase gene family AT5G40440 26.165 5.97e-11 61.6
Bial22g01396 . 39 333 MAP Kinase Kinase gene family AT4G29810 30.769 6.39e-40 149.0
Bial20g02055 BST 71 325 MAP Kinase Kinase gene family AT3G21220 30.534 2.85e-20 90.9
Bial24g03499 . 43 350 MAP Kinase Kinase gene family AT4G29810 30.225 3.94e-41 150.0
Bial14g00031 BST 1 354 MAP Kinase Kinase gene family AT4G29810 67.797 0.0 520.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Bial Pkinase 1.2e-61 CL0016 PK NEK