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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01426 ATGTCAACCGACGATCCACCGTCCTCCACCACCGCCATGTCAGCACTCGACAAACCACTCCACCTGCTCACCGAAGACGACATTTCGCAGCTCACGCGCGAAGACTGCCGCCGTTTCCTTAAACAAAAAGGTATGCGGCGGCCGTCGTGGAACAAATCACAGGCGATCCAGCAGGTGATTATGCTCAAGGCGTTACTTGAACCGGCACCGGAGTCAGAAGACGGTGGCCGGAAAGTGTACATTCGCCAACAACAAACCCTAGCCACTCGTGTCCAGAAAGGAACAAGTGCCGATACGGAGATCTCTCTTTCTGCGGAGGAATCAGTTCCCGGTCACCGTAATGATGCGGAGAAGTCAGATGTTTTGGGGGATAATGATTCTGCTCCTACAAGGATTGTGGGTGGGATAGAAGAGACAAAAGGACAAATGACAATATTTTATAGTGGCAAGGTGAATGTCTATGATGATGTCCCAGCTGATAAGGCACATGCACTATTCCAGCTTGCTGCAAGCCCGATCCAGTATTCTCAAGAAGATCCATTTGATGGAAGGATGTTGCAATCTCCTAGCATCAATGTGGGACGAGATTTCCCTCATGTACCCTCGCCAGGCCTGCAGACAGTGAGAATGACGGATAGCTATCGTATGCACAGGGAAGAAAGCCATATATCACGTGAAGATAACTCTGCTGAAGGTTCAGCAAGCAGAAAAGCATCTGTCCAAAGATACCTAGAGAAACGAAAAGACAGGTTTAAGAGCAAGAGGAAAGTAGGAGATGTTTATGCTAACCATCAGAATAATCTACATGAGCAGTTTAGTAGGAGTGCCACTTGCTCCCCGCCTCCAGTCAGACCGCCTAACACCCCTAACCGCTTTAACTGA 882 49.09 MSTDDPPSSTTAMSALDKPLHLLTEDDISQLTREDCRRFLKQKGMRRPSWNKSQAIQQVIMLKALLEPAPESEDGGRKVYIRQQQTLATRVQKGTSADTEISLSAEESVPGHRNDAEKSDVLGDNDSAPTRIVGGIEETKGQMTIFYSGKVNVYDDVPADKAHALFQLAASPIQYSQEDPFDGRMLQSPSINVGRDFPHVPSPGLQTVRMTDSYRMHREESHISREDNSAEGSASRKASVQRYLEKRKDRFKSKRKVGDVYANHQNNLHEQFSRSATCSPPPVRPPNTPNRFN 293
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01426 293 MobiDBLite consensus disorder prediction 110 124 - -
Bial10g01426 293 Pfam Jas motif 236 254 IPR018467 -
Bial10g01426 293 Pfam tify domain 138 170 IPR010399 -
Bial10g01426 293 MobiDBLite consensus disorder prediction 240 259 - -
Bial10g01426 293 MobiDBLite consensus disorder prediction 217 293 - -
Bial10g01426 293 MobiDBLite consensus disorder prediction 264 278 - -
Bial10g01426 293 ProSiteProfiles Tify domain profile. 136 171 IPR010399 -
Bial10g01426 293 SMART tify-2 136 171 IPR010399 -
Bial10g01426 293 MobiDBLite consensus disorder prediction 217 232 - -
Bial10g01426 293 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 26 263 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Bial10g01426 293 MobiDBLite consensus disorder prediction 279 293 - -
Bial10g01426 293 MobiDBLite consensus disorder prediction 91 129 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01426 K13464 jasmonate ZIM domain-containing protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
361591 Bial10g01426 Bial12g02648
361592 Bial10g01426 Bial24g02493
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:14351479 Bial12g02648 Bial-Chr12:56726457 wgd
Bial Bial-Chr10:14351479 Bial24g02493 Bial-Chr24:55745571 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bial4g01344 ACH,BST,WGDA 1 251 Tify gene family AT1G19180 34.601 7.46e-37 126.0
Bial14g00232 BST,WGDA 17 228 Tify gene family AT1G19180 34.579 2.00e-26 100.0
Bial2g00009 . 121 224 Tify gene family AT1G19180 37.5 8.12e-17 70.5
Bial18g02385 BST,WGDA 5 192 Tify gene family AT5G13220 39.362 1.67e-29 105.0
Bial2g00505 ACH,BST,WGDA 17 228 Tify gene family AT1G19180 34.579 1.07e-26 100.0
Bial2g00802 ACH,BST,WGDA 18 286 Tify gene family AT3G21175 51.333 5.18e-80 245.0
Bial3g03438 ACH 121 228 Tify gene family AT1G19180 41.667 4.21e-15 72.4
Bial3g03437 ACH,BST,WGDA 121 236 Tify gene family AT1G19180 37.069 2.38e-16 74.3
Bial3g03432 ACH 26 236 Tify gene family AT1G19180 32.093 7.55e-17 73.9
Bial3g03431 BST,WGDA 18 234 Tify gene family AT1G19180 35.747 1.64e-22 90.1
Bial3g02874 ACH,BST,WGDA 18 262 Tify gene family AT3G21175 58.103 1.40e-85 259.0
Bial8g00263 . 27 189 Tify gene family AT5G13220 35.503 4.19e-20 80.9
Bial8g00391 ACH,BST,WGDA 6 260 Tify gene family AT1G70700 34.066 3.50e-26 101.0
Bial12g02648 BST,WGDA 6 196 Tify gene family AT4G14720 44.503 2.02e-43 146.0
Bial4g00651 BST 3 127 Tify gene family AT1G30135 37.594 2.09e-16 68.6
Bial12g01967 BST,WGDA 78 267 Tify gene family AT1G51600 64.249 4.60e-80 241.0
Bial12g01942 ACH,BST,WGDA 15 242 Tify gene family AT1G74950 33.333 2.41e-24 96.3
Bial13g01372 BST,WGDA 27 265 Tify gene family AT4G32570 39.527 1.21e-42 149.0
Bial1g01200 BST,WGDA 27 226 Tify gene family AT4G32570 35.857 1.33e-23 95.9
Bial9g00466 BST,WGDA 4 192 Tify gene family AT5G13220 38.743 4.68e-29 104.0
Bial13g00243 ACH,BST,WGDA 1 332 Tify gene family AT3G17860 31.953 3.98e-30 114.0
Bial24g02493 BST,WGDA 6 196 Tify gene family AT4G14720 42.932 1.49e-38 133.0
Bial2g03169 . 119 244 Tify gene family AT1G70700 39.535 3.71e-19 80.5
Bial2g02813 BST,WGDA 4 265 Tify gene family AT4G32570 32.239 1.06e-29 115.0
Bial21g00796 ACH,BST,WGDA 1 252 Tify gene family AT1G19180 32.685 1.22e-31 112.0
Bial14g00499 BST,WGDA 18 286 Tify gene family AT3G21175 55.797 1.63e-85 258.0
Bial19g02615 ACH,BST,WGDA 13 226 Tify gene family AT1G19180 31.839 9.90e-25 95.5
Bial10g01426 WGDA 6 285 Tify gene family AT4G14720 40.741 1.63e-53 175.0
Bial5g02276 BST,WGDA 5 165 Tify gene family AT5G13220 32.919 5.65e-15 67.8
Bial7g02605 ACH,BST,WGDA 6 228 Tify gene family AT1G74950 34.667 1.29e-26 100.0
Bial17g02280 BST,WGDA 4 225 Tify gene family AT4G32570 30.952 3.48e-17 79.0
Bial24g01834 BST,WGDA 78 267 Tify gene family AT1G51600 64.249 2.04e-80 241.0
Bial24g01814 ACH,BST,WGDA 18 227 Tify gene family AT1G19180 33.333 1.46e-23 93.2
Bial15g03102 ACH,BST,WGDA 18 262 Tify gene family AT3G21175 59.363 1.82e-85 262.0
Bial9g00806 ACH,BST,WGDA 108 252 Tify gene family AT1G19180 35.862 6.57e-23 87.8
Bial16g01170 ACH,BST,WGDA 127 251 Tify gene family AT1G19180 37.6 3.05e-24 90.5
Bial18g00193 ACH 119 244 Tify gene family AT1G70700 42.52 7.83e-21 85.1
Bial20g00158 BST,WGDA 1 332 Tify gene family AT3G17860 34.226 1.13e-31 118.0
Bial16g00606 BST 3 127 Tify gene family AT1G30135 36.364 2.76e-16 68.2
Bial23g02743 . 17 225 Tify gene family AT1G19180 31.963 1.13e-21 88.2
Bial1g00188 BST,WGDA 1 205 Tify gene family AT3G17860 29.268 2.06e-15 70.9
Bial14g00006 . 121 224 Tify gene family AT1G19180 37.5 8.12e-17 70.5
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Bial tify 5.3e-15 No_clan TF Tify