AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01427 ATGAGGACATTCTTTCCATCTGAATCTTGTAAAGAAACACATCTAAATGCTCTCAATCCACAATCTTGGCTGCAAGTTGAAAGAGGAAAGCTTTCGAAAGTCTCGCCTCACTCTCCTTCCTCATTAGAATCTCTAATCAAAGTGCCTGATCCACCGATTCTTCCATTCTTTAAACCTGTTGATTATGTAGAAGTTTTAGCCCAAATCCACAAAGAACTCGAAACATGCCCTTCACACGAGCGCACAAACCTCTATTTATTACAATTTCAAGTCTTTAAGGGCCTCGGTGACATTAAGTTAATGAGAAGAAGCCTTAGATTAGCTTGGCTCAAAGCAAGTACGGTTCACGAGCGGCTTGTTTTTGGGGCGTGGTTAAAATATGAAAAACGAGGCGAAGAACTTATATCTGATTTACTCTCTTCGTGTGGTAAATGCTCAAAAGAGTTTGGATTGATAGATATCGGCTCTGAGCTCCCGTCTGTAGTAAACCCTAGTTTAACTGACGGTCCTATGGTTGATCAAAAGAATAATGTATCGGGAACGGTCTCGTTTAAAGTCGGGGATGAAAAAATAACATGTGATAGACAAAAAATGGCGAACCTTTCGCCCCCTTTTCGTTCTATGCTTAACGGGTGTTTTCTTGAATCGGTTTCCGAAGACATCGATTTGTCAAAAAATGATATTTCACCGAAGGGCATGAAGGTAATAAGTGAATTTAGCTCAACCGGTGTTTTACCAGATTTACCAACTGATCTTTTACTAGAAATTATGGTGTTTTCTGGTAAGTTTTGTTGTGAGAATCTGAAAGATTCTTGCGATCGGAAACTTGCAAAACTCGTGTCATCAAGAAACGATGCGATTGAGCTTATGGAATATGCTCTAGAAGAGAATTGCCCAGTTCTTTCCGCCTCATGTTTGCAGGTTTTCCTTCAAGAACTCCCTGATTCTCTTAACGATGAACGTGTTGTTGACTTGTTAACCGGTGTTAACACTTTGCATAGATCAATAATGGTGGGGTCCGCTTCGTTTTCACTCTATTGTTTATTAAGTCAAGTTGCTATGGATCTTGATCCAGGGTCTGATAAGTCGGCTCTTTTATTGGAACAATTGGTGGATTGTGCAGAAAATAGTCGACAAAAGATGGTGGCGTATCATATGTTAGGATGTGTGAAATTAGTCAAGAAAGAATATGAAGAAGCCGAACGAGTCTTTGAGGTTGCACTGAAAGAAGGGCACGTTTATTCGGTTATAGGTTTGACTAGAATCGGTCAAATCAAGGGCAAAAAGCTTGAATCTTTCAAGAAACTTAGCTCGGTCATTTCAAATCACACTCCTTTAGGGTGGATGTATCAAGAAAGATCTTTATATTGTGAAAATGATGAAAATAGATGGGAAGATTTTGAAAAAGCAACCAACTTGGATCCAACTTTAACGTACCCGTATATGTACCGTGCGGCTTCGTTAATGAAAAAGCAAAATGTCCAAGATTCTCTGGCGGAGATCAACAAGATTCTTGGTTTTAAACTTGCGGTTGAATGTTTGGAGTTGAGGTTTTGTTTTTATTTGGTTCTTGAAGATTATCAATCGGCTATTTGTGATGTTCAAGCTATTCTTACGATTTCTCCCGATTATCGGATGTTTGAGGGGCGGGTGCCTGCAACACAGTTTCAAACTTTGGTTCGTGAGCATGTGCCAAATTGGACGACTGCAGATTATTGGTTACAGCTGTATGATCGGTGGTCGGCTGTTGATGATATCGGGTCACTTTCTGTAATATATCAAATGCTCGAGTCGGAAACAGCTAAAGGAGTTTTGTATTTTAGACAGTCTTTGCTTCTCCTCAGGTTAAATTGCCCGGAAGCAGCAATGCGAAGTTTACAGTTAGCCCGGCAACATGCATCAAGCGAACATGAACGTTTAGTTTACGAGGGTTGGATATTATATGATACGGGCCATTGTGATGAAGGGTTAAAAAAGGCTGAAGAATCTATTAGTTTGAATAGATCTTTTGAGGCTTTTTTTCTAAAAGCCTATGCTTTAGCAGATTCTAGTCAAGATCCTGCCTGCTCTTCAACCGTTGTAGCTCTTCTTCAAGATGCCCTTAAATGCCCTTCTGACCGGCTTCGTAAAGGCCAGGCATTGAACAATCTTGGAAGTGTGTATGTAGACTCTGGTAAACTAGACCTTGCAGCCGACTGCTACATTAACGCCCTTAAGATTCGACACACACGGGCCCACCAGGGGCTTGCGCGTGTCCATTATTTAAAAAACGACAAACCAGCTGCGTATGAAGAAATGACAAAATTGATTGAAAAGGCGCGCAACAATGCATCTGCTTATGAGAAAAGATCAGAGTATTGTGAACGTGAACAGACGAAGATAGATCTTGAAATGGTTACTCGGTTAGATCCTCTTCGGGTTTACCCTTACAGATACCGTGCAGCAGTCTTGATGGACAACCACAAGGAGAAAGAAGCGATCGCGGAGCTTTCAAGGGCGATAGCGTTCAAAGCGGACCTGCACTTATTGCATCTACGAGCAGCGTTTCATGAACATATTGGGGATGTAGCGGGTGCCATGCGGGACTGTCGGGCTGCTCTCTCCTTTGACCCGAATCATCAAGAGATGCTTGAACTGCGAAGCCGTGTAAACAGCCAAGAACCTTAA 2667 41.62 MRTFFPSESCKETHLNALNPQSWLQVERGKLSKVSPHSPSSLESLIKVPDPPILPFFKPVDYVEVLAQIHKELETCPSHERTNLYLLQFQVFKGLGDIKLMRRSLRLAWLKASTVHERLVFGAWLKYEKRGEELISDLLSSCGKCSKEFGLIDIGSELPSVVNPSLTDGPMVDQKNNVSGTVSFKVGDEKITCDRQKMANLSPPFRSMLNGCFLESVSEDIDLSKNDISPKGMKVISEFSSTGVLPDLPTDLLLEIMVFSGKFCCENLKDSCDRKLAKLVSSRNDAIELMEYALEENCPVLSASCLQVFLQELPDSLNDERVVDLLTGVNTLHRSIMVGSASFSLYCLLSQVAMDLDPGSDKSALLLEQLVDCAENSRQKMVAYHMLGCVKLVKKEYEEAERVFEVALKEGHVYSVIGLTRIGQIKGKKLESFKKLSSVISNHTPLGWMYQERSLYCENDENRWEDFEKATNLDPTLTYPYMYRAASLMKKQNVQDSLAEINKILGFKLAVECLELRFCFYLVLEDYQSAICDVQAILTISPDYRMFEGRVPATQFQTLVREHVPNWTTADYWLQLYDRWSAVDDIGSLSVIYQMLESETAKGVLYFRQSLLLLRLNCPEAAMRSLQLARQHASSEHERLVYEGWILYDTGHCDEGLKKAEESISLNRSFEAFFLKAYALADSSQDPACSSTVVALLQDALKCPSDRLRKGQALNNLGSVYVDSGKLDLAADCYINALKIRHTRAHQGLARVHYLKNDKPAAYEEMTKLIEKARNNASAYEKRSEYCEREQTKIDLEMVTRLDPLRVYPYRYRAAVLMDNHKEKEAIAELSRAIAFKADLHLLHLRAAFHEHIGDVAGAMRDCRAALSFDPNHQEMLELRSRVNSQEP 888
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01427 888 Gene3D Potassium Channel Kv1.1; Chain A 175 319 IPR011333 -
Bial10g01427 888 Pfam Tetratricopeptide repeat 712 740 IPR019734 GO:0005515(InterPro)
Bial10g01427 888 Gene3D Tetratricopeptide repeat domain 794 887 IPR011990 GO:0005515(InterPro)
Bial10g01427 888 SUPERFAMILY TPR-like 376 580 IPR011990 GO:0005515(InterPro)
Bial10g01427 888 PANTHER ETO1-RELATED 1 887 IPR044631 GO:0010105(InterPro)
Bial10g01427 888 SMART BTB-4 180 280 IPR000210 GO:0005515(InterPro)
Bial10g01427 888 SUPERFAMILY POZ domain 182 278 IPR011333 -
Bial10g01427 888 SUPERFAMILY TPR-like 513 740 IPR011990 GO:0005515(InterPro)
Bial10g01427 888 Coils Coil 390 410 - -
Bial10g01427 888 Coils Coil 763 790 - -
Bial10g01427 888 ProSiteProfiles TPR repeat profile. 711 744 IPR019734 GO:0005515(InterPro)
Bial10g01427 888 Gene3D Tetratricopeptide repeat domain 599 793 IPR011990 GO:0005515(InterPro)
Bial10g01427 888 SMART tpr-5 511 544 IPR019734 GO:0005515(InterPro)
Bial10g01427 888 SMART tpr-5 711 744 IPR019734 GO:0005515(InterPro)
Bial10g01427 888 SMART tpr-5 603 636 IPR019734 GO:0005515(InterPro)
Bial10g01427 888 SMART tpr-5 381 414 IPR019734 GO:0005515(InterPro)
Bial10g01427 888 SMART tpr-5 637 670 IPR019734 GO:0005515(InterPro)
Bial10g01427 888 SMART tpr-5 840 873 IPR019734 GO:0005515(InterPro)
Bial10g01427 888 Gene3D Tetratricopeptide repeat domain 351 548 IPR011990 GO:0005515(InterPro)
Bial10g01427 888 SUPERFAMILY TPR-like 695 881 IPR011990 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01427 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
361593 Bial10g01427 Bial12g02650
361594 Bial10g01427 Bial24g02494
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:14362001 Bial22g01221 Bial-Chr22:12571644 dispersed
Bial Bial-Chr10:14362001 Bial12g02649 Bial-Chr12:56735554 wgd
Bial Bial-Chr10:14362001 Bial24g02494 Bial-Chr24:55753049 wgd