AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01432 ATGGGGACTGAAAATCCTAACCGTCCAAATTTTCATCAAGGGCCTACTAGTACACCTTTTGCAGCTCCCCAAACCAACATGCCCATTGGTTCATCTCGTCCCATGGTTGGATCACAACCCCCTGCTTTCAGGCCAACATCAGCTCCTGCTATGCCAAATTCATCTCCATTTTCTTCTCCTGGGCCCACAGCTGGATCCGGGACTCCTGGTTTTAGACCCATGCAACCAGGTAGGCCCGCTCCTTCATATGGCCCACCAACTACAGGACCTCCCCAGCGTTTCTCAGCTCCACAGTTTCCTCAAACATCTCAACCACCTGTGTCACAAACTTCCAATGTGGGCCAGCCCATGTTGCCACCATCAATGAGACCACCTCCTCCCGCCCATGTTCCATCTGTACCAATGGGATCTCCACCTCAAAGCTTGTACACTGTTTCTTCTAGCAATAATCCTCCATATTCTGCTTCTGGACCAAACATCCAGCCACCACCATCTTCAACCAGACCGTCTTACCCTGGTTATCCAGGTATGCAAAGTAGCACAATAAGTCCTCCACCACCGCCACTTTATAATCAAGGCGGTTATGCTCCACCTCAGCCCGCCATACCTGCTCCTTTTTCTTCTCATCAAGGTGGTTATGGGCAAGTTCCACCAGTTGCATCATATGTAGGCGGCTCCGCGCCGCCTACAGGAGTTACACCAGGTTTGGTAGAAGATTTCAGCTCACTTTCTCTAGGATCTGCTCCTGGATCTTATGATGGTGGGCTTGATGCTAAAGCATTGCCACGACCACTGGACGGTGATGTGGAACCGAGTTCTTTTGCTGGGATGTATCCCATGAATTGTGATTCTAGATATCTAAGACTTACAACTAGTGCTATTCCAAATTCACAGTCTTTGGTTTCCAGGTGGCACTTGCCTCTTGGAGCAGTTGTTTGTCCACTTGCAGAAGCTCCTGAGGGGGAGGAAGTGCCAATAGTAAATTTTGCCACAATGGGTATCGTTCGTTGTAGAAGGTGCCGTACGTATGTAAATCCATATGTGACTTTCACAGATGGTGGAAGAAAGTGGAGGTGCAATATATGTGCTTTACTTAATGATGTGCAAAATGATTATTTCTCTCATTTGGACGCCACTGGAAAAAGAGTTGATCTTGATCAACACCCCGAGCTTACAAAGGGTTCTGTTGAATTTGTTGCTCCAGCTGAATACATGGTTCGGCCTCCAATGCCACCATTATACTTCTTTATGATTGATGTGTCAATATCTGCAGTTAAAAGTGGAATGCTTGAGGTGATGGCACAAACTATTAAATCTTGTTTGGATAATTTGCCGGGCAGCCCCAGAACACAAATTGGGTTTATAACTTTTGACAGCACGATTCACTTTTACAATATGAAGTCATCTTTGACTCAGCCTCAAATGATGGTCGTATCGGATTTAGATGATATTTTTGTTCCATTGCCAGATGATCTCCTTGTCAACCTGTCTGAATCAAGACCTGTGGTGGAGGCATTCTTGGATAGCTTGCCTTCGATGTTTCAGGATAATGTTAATGTGGAATCTGCTTTTGGGCCCGCCCTCAAAGCAGCTTTTTTGGTTATGAGCCAACTTGGAGGGAAATTGTTAATTTTCCAGAGCACTCTTCCCTCACTCGGTGTTGGTCGGTTGAAGTTGCGTGGAGACGATCTTCGTGTTTATGGAACAGATAAGGAGCATACTTTAAGAATACCAGAAGACCCATTTTATAAACAGATGGCTGCTGATTTCACCAAATTTCAAGTTGCAGTTAATGTATATGCATTTAGCGACAAGTATACTGATATAGCCTCATTAGGCACTTTAGCGAAATACACTGGCGGTCAGGTATATTATTATCCAAGCTTTCATTCTGCCATTCACAAAGACAAGTTGAGACATGAGTTGGCTAGAGATCTCACTAGAGAAACTGCTTGGGAAGCTGTAATGCGTATTAGATGCGGGAAAGGAGTGCGCTTCACCTCATATCATGGGAATTTTATGCTAAGATCCACGGATCTACTGGCACTCCCGGCAGTTGATTGTGATAAAGCCTATGCGATGCAGTTTGCTCTTGAAGAGACATTGCTTACAACTCAGATTGTGTACTTTCAAGTTGCGTTACTATACACTGCATCTTGTGGTGAAAGGCGTATTAGAGTACACACTGCTGCAGCATCAGTGGTTGCAGATTTAGGAGAAATGTACCGCCAGGCAGATACTGGTGCGGTTGTTTCTTTGCTTGGTCGGTTAGCAATTGAGAAATCATTATCATATAAATTGGAAGATGCTCGTAATGCGGTTCAACAGAAAATCGTGAAAGCCCTTAAAGAATACCGAAAACTCTATTCAGTGCAGCATCGCGTAGGGAACCGGATGATCTACCCAGAATCACTCAACTATTTGCCTTTATATGGATTATCACTATGCAAATCAACAGCACTTCGTGGCGGTTATGCTGATGCACAACTTGATGAACGGTGTGCAGCAGGCTTCACCATGATGGCTTTACCTGTTAAAAAGATGTTAAAGCTCTTATACCCTAGCTTGTTGAGAGTCGACGAATATCTTATCAAGACACCTGCTGTGGATGATGAATTTGACAAAATTTGTAAAAGGCTGCCACTTGTTGCAGAGAGCTTAGATTCTAGAGGAATTTATATATTTGATGACGGTTTCCGTTTTGTTGTGTGGTTTGGTCGTATGCTTTCACCAGATTTAGCCCGAAATCTAGTTGAGGAAGATTCAGCTACAGATTTCTCAAGGAATCAGGTTTGTCTGACCGAACGTAACAATGACATGTCAAGAAAGCTGATGGGCATACTAAAGAAACTTAGAGAGGCTGATAAATCATATTATCAATTATGTCATCTCGTGAGACAAGGCGAACAACCCCGGGAAGGTTTCTTTCTACTCTTGAATTTAATTGAGGACCAGGTCGGTGGTATGAGCGGTTATGCTGATTGGATGCTTCAGATTCATCGACAAGTACAACAATAA 3018 44.1 MGTENPNRPNFHQGPTSTPFAAPQTNMPIGSSRPMVGSQPPAFRPTSAPAMPNSSPFSSPGPTAGSGTPGFRPMQPGRPAPSYGPPTTGPPQRFSAPQFPQTSQPPVSQTSNVGQPMLPPSMRPPPPAHVPSVPMGSPPQSLYTVSSSNNPPYSASGPNIQPPPSSTRPSYPGYPGMQSSTISPPPPPLYNQGGYAPPQPAIPAPFSSHQGGYGQVPPVASYVGGSAPPTGVTPGLVEDFSSLSLGSAPGSYDGGLDAKALPRPLDGDVEPSSFAGMYPMNCDSRYLRLTTSAIPNSQSLVSRWHLPLGAVVCPLAEAPEGEEVPIVNFATMGIVRCRRCRTYVNPYVTFTDGGRKWRCNICALLNDVQNDYFSHLDATGKRVDLDQHPELTKGSVEFVAPAEYMVRPPMPPLYFFMIDVSISAVKSGMLEVMAQTIKSCLDNLPGSPRTQIGFITFDSTIHFYNMKSSLTQPQMMVVSDLDDIFVPLPDDLLVNLSESRPVVEAFLDSLPSMFQDNVNVESAFGPALKAAFLVMSQLGGKLLIFQSTLPSLGVGRLKLRGDDLRVYGTDKEHTLRIPEDPFYKQMAADFTKFQVAVNVYAFSDKYTDIASLGTLAKYTGGQVYYYPSFHSAIHKDKLRHELARDLTRETAWEAVMRIRCGKGVRFTSYHGNFMLRSTDLLALPAVDCDKAYAMQFALEETLLTTQIVYFQVALLYTASCGERRIRVHTAAASVVADLGEMYRQADTGAVVSLLGRLAIEKSLSYKLEDARNAVQQKIVKALKEYRKLYSVQHRVGNRMIYPESLNYLPLYGLSLCKSTALRGGYADAQLDERCAAGFTMMALPVKKMLKLLYPSLLRVDEYLIKTPAVDDEFDKICKRLPLVAESLDSRGIYIFDDGFRFVVWFGRMLSPDLARNLVEEDSATDFSRNQVCLTERNNDMSRKLMGILKKLREADKSYYQLCHLVRQGEQPREGFFLLLNLIEDQVGGMSGYADWMLQIHRQVQQ 1005
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01432 1005 MobiDBLite consensus disorder prediction 94 117 - -
Bial10g01432 1005 MobiDBLite consensus disorder prediction 1 33 - -
Bial10g01432 1005 SUPERFAMILY Helical domain of Sec23-24 746 853 IPR036175 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Bial10g01432 1005 FunFam protein transport protein Sec24D isoform X1 411 648 - -
Bial10g01432 1005 SUPERFAMILY vWA-like 409 648 IPR036465 -
Bial10g01432 1005 SUPERFAMILY beta-sandwich domain of Sec23-24 163 744 - -
Bial10g01432 1005 PANTHER SEC24-RELATED PROTEIN 24 1005 IPR050550 GO:0000149(PANTHER)|GO:0008270(PANTHER)|GO:0030127(PANTHER)|GO:0070971(PANTHER)|GO:0090110(PANTHER)
Bial10g01432 1005 Pfam Sec23-Sec24 helical domain 746 849 IPR006900 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Bial10g01432 1005 SUPERFAMILY Zn-finger domain of Sec23-24 323 408 IPR036174 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Bial10g01432 1005 MobiDBLite consensus disorder prediction 118 134 - -
Bial10g01432 1005 Gene3D - 281 393 - -
Bial10g01432 1005 Gene3D von Willebrand factor, type A domain 411 648 IPR036465 -
Bial10g01432 1005 Pfam Gelsolin repeat 881 927 IPR007123 -
Bial10g01432 1005 MobiDBLite consensus disorder prediction 156 170 - -
Bial10g01432 1005 MobiDBLite consensus disorder prediction 48 65 - -
Bial10g01432 1005 MobiDBLite consensus disorder prediction 179 204 - -
Bial10g01432 1005 Gene3D Sec23-Sec24 helical domain 735 1003 - -
Bial10g01432 1005 MobiDBLite consensus disorder prediction 74 93 - -
Bial10g01432 1005 MobiDBLite consensus disorder prediction 137 155 - -
Bial10g01432 1005 Pfam Sec23-Sec24 beta-sandwich domain 651 734 IPR012990 -
Bial10g01432 1005 Gene3D - 282 734 - -
Bial10g01432 1005 Pfam Sec23-Sec24 zinc finger 334 372 IPR006895 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Bial10g01432 1005 MobiDBLite consensus disorder prediction 1 210 - -
Bial10g01432 1005 CDD Sec24-like 409 650 IPR041742 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Bial10g01432 1005 Gene3D Severin 854 984 IPR029006 -
Bial10g01432 1005 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23-24 868 1005 IPR036180 -
Bial10g01432 1005 Pfam Sec23-Sec24 trunk domain 409 645 IPR006896 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01432 K14007 protein transport protein SEC24
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Event-related genes

Select Gene_1 Gene_2 Event_name
361597 Bial10g01432 Bial12g02655
361598 Bial10g01432 Bial24g02499
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:14452577 Bial9g00782 Bial-Chr9:9478300 dispersed
Bial Bial-Chr10:14452577 Bial12g02655 Bial-Chr12:56809919 wgd
Bial Bial-Chr10:14452577 Bial24g02499 Bial-Chr24:55835345 wgd