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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g01462 ATGAGCAAGCCTGCGAAAGTGGGATACTCCATGAAACGCAAGCCTGCTGCCACATCCACTGACGGTGAAAAAATTATTGTTGAAGGGAAGAATTCATGGCCGGAGCTTGTAGGGGAAAAAGGAGAAGTAGCAAAGGCTACAATTGAAAAAGAGAATCCACTTGTGAATGCCATTATAGTGGGTGAAAATGAGCCAGTGATTGGAAACTTTGTTAGCAACCGTGTGTGGGTCGTGGTGAATTCCGAGGGATTGAAGATGGCATCCATTTCCACTCCCATTTCTACCTTCTCACCATCATTCTCTTTGCTCCAAAAGCCTAAGATCACCAACCAGAGTTCTCCAGTTCTCCGATTGCTATCGATGAGTAAGAGGCCGGGGAAAATCAGTTGTTCCATTGAAGGTAAGCCCGCTGTCACATCGGACGATAGTGCACAACCAGGCGGTGAAGGAAAGAGTTCATGGCCAGAGCTTGTTGGGATAAAAGGAGAAGTGGCGAAGGCTATAATCGAGAAAGAGAATCCAGTGGTCACTGCCTACGTGATACTGGAAGGAACTCCCATCCCTTTGGATTACAGGACCGACCGTGTGTGGGTTGTGGTGAACTGTGAGGATGTGGTGATCCAAACACCGACCATTGGCTAG 642 47.82 MSKPAKVGYSMKRKPAATSTDGEKIIVEGKNSWPELVGEKGEVAKATIEKENPLVNAIIVGENEPVIGNFVSNRVWVVVNSEGLKMASISTPISTFSPSFSLLQKPKITNQSSPVLRLLSMSKRPGKISCSIEGKPAVTSDDSAQPGGEGKSSWPELVGIKGEVAKAIIEKENPVVTAYVILEGTPIPLDYRTDRVWVVVNCEDVVIQTPTIG 213
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g01462 213 Gene3D Trypsin Inhibitor V, subunit A 25 91 - -
Bial10g01462 213 Gene3D Trypsin Inhibitor V, subunit A 147 212 - -
Bial10g01462 213 ProSitePatterns Potato inhibitor I family signature. 33 44 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Bial10g01462 213 PRINTS Potato inhibitor I signature 153 166 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Bial10g01462 213 PRINTS Potato inhibitor I signature 178 189 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Bial10g01462 213 PRINTS Potato inhibitor I signature 190 200 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Bial10g01462 213 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 146 213 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Bial10g01462 213 SUPERFAMILY CI-2 family of serine protease inhibitors 27 83 IPR036354 -
Bial10g01462 213 SUPERFAMILY CI-2 family of serine protease inhibitors 149 213 IPR036354 -
Bial10g01462 213 Pfam Potato inhibitor I family 30 83 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Bial10g01462 213 Pfam Potato inhibitor I family 151 213 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Bial10g01462 213 ProSitePatterns Potato inhibitor I family signature. 154 165 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Bial10g01462 213 MobiDBLite consensus disorder prediction 132 155 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g01462 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:14677392 Bial10g01462 Bial-Chr10:14847750 dispersed
Bial Bial-Chr10:14847750 Bial10g01465 Bial-Chr10:14861579 dispersed
Bial Bial-Chr10:14841473 Bial10g01462 Bial-Chr10:14847750 tandem
Bial Bial-Chr10:14847750 Bial10g01463 Bial-Chr10:14854863 tandem