AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g02033 ATGAAGAGAAGCTTATTAGGGTTTCATCCTCCTCACTTCTCAGAGGAAGAGGCATGGCTCCCTGCTTGGCTTCATCCTTGTAATCAACCATCTTCTTCTTCTCAGGAAATCGGCCGCCTTCAAGAAAACATTGTTCCTACACAAAATGGAAACTTGTCGAATGACGGTACGTGTAAGAGCCTCCGCTTATTCTTATCCGGTGATGATGACAACTCGCCAATGAGTTTTCCTTCATCTTCTACCAATCATCAAGTTCGGTATCGTCTTTGTCTGTCATCAACCGAAGAATCTCAGTATTCACTCAATCCAAGTAAATCCAAAGTTATCCCAGATGAGGGCAAATTAGTAATTACACAACCCAAATCTTTAACCTTTAAGGAGCAAACCGAGACAAATGTTAAGGTAGATGACACATGTCAAGAAACTGACATCAGCAATGCGATTGAACTAGCTGTTGCAGCATCAGAAGCGTTAACAATACACAAGGTATTAAAAGATGAGCTCTTGGTTGCATCATCTGTACTCGAGGCTGCAGTACGCTTAAAACAGGCCCGTTTGGAGAATTCCAGAGAGAACCTCGGTAGCGCGCTTGAGGAAAGCGGTGAGGTTGACTTTGACTTTTTTTCGGATTTGGATTACTTGACCATGGCGGATGCATATGAAGATGTAGGGTTAACTGTTGCAAACCATGGTGACCCGAGTGCTTATTGTTCCGTATCTCATGTAAATGATACTTTTGGTTCTGAAAATTATACATCTAATGCCAAACACGAGGGGAATATATTATCAAAGGGCTTTGTATTGGAATCTTGTGAACGTGTTGCACGCAAGGAACGTCTTGATTATGAATCATTAGGTACAGAGAATGCTGATCTGGCGTGTGATGTTGATCCTGTGTTTAATTGTTCGGTTGAGCAAGCTGATTTTTGTGCAACAGAGGCTGGCTTACAGAAAGAGGGTTTTTCAGTTGAGGATATTACAACATCTCAAACCATTTTAAGATCTAATGAAAGACAAAGTAAGATGACAAGTTTGGTTCCAGATAGATTTCAAAGCCGCTGGTTTGGTGGTTGGACATTGAAGAATGACGAAAGCATTCCCACTGTTGCAAATGATAAACATAAACACACAACTAATGAGCTATTTGCTAATGAAACTAGTTCCCTCTCAGAATCTGCTGATATTGCTCCCGACATGAGTTCCTGCGTACAGATCAGACAAGATAAAGACACAACCGTCTCTCAATCAAGTGTAGTTCTTCAACATGCATACGAGAATACTGATAATGACAAGAATTTGATTCCTGGTGACGTGGCACTTTCTCCCAATGTCTCCCCTATGGACCCTATGTGTTCTGTTGTTCCTTGCAGCTATGCTTCTGATAGTGTTGCATCTCAGAACACCGAACAACAGGAAAATCTCAACAACCATCCGCTCCCCATGGTTCAACCGAATCTGGATAATATAGAACTTAATCGTGAGAGTTCACCCACTATACACAGACAGGTGACATCCCTTAAAACTTACAGCATGCTTTATCCTACATGTGCTCCTTATTTAGACAATGAACACACGCGTGTCGAACCATCATCATTTAAACATAATCAGACTGCAGAAGCAGATACTGCGCTGACTGGTCAACACGAGAAGGAGACCACCAAGGTTTCCCAAAAGGTAGAATCTATAGTTCCGAGACGAAAACGTGTCCGTTTTTCAGAAACTGAAATTTGTTACCGACAAGTAAAAAAGTTCCAAAAAGCACCACAAGCGTTATTCAAAGATCCTTCAGTTGCAGGTAGAATTTGCAGACGGGTAACAAGAAGCAAATTTAAACCTCGGGAAGTTAAAAAAACCAACAAGACGTTACTGCAAGATCTAAAGTTTCTACTAACGGGATTTTCGGTTAAGAAACATAAACAAATCAAGAATTTAATTCAAGAAAATGGCGGAATAGTTTTTGATGATATTCCTTCAATATCCAGAAGAAAGAAAACCTCAAAACATCCACTTATTTTGTGTCCCAAAAAGCTGCTAACAACCAAGTTCTTGTATGGATGTGCAATAAGTGCTAGTATTCTTAAAATAACATGGTTGTTTGATTCAGTTGATGAAGGTTTGATCTTACCACATAAGAAGTACACGGTTTTAAACGATCATGCAACCGATAACCATCTTATATTCGAGGATATTGCCATCATGCTTCATGGGAAACAAGATTTCTGCAGTAAAATGGGAAAGGTTGTAAAGCATGGAGGCGGGTCGGTTTTCAAAACGTTTCATTGGTTGATTAAGAGTCTTGATTCTAAGAAGGTGTCGGTAGGGGTTATTGTTGTGGAGGACGAAAATGGTATTTCACGTCAGTTGAAGCAATGCGCCTTAGAGCAAAAGATATCTGTGATGCCTTATAGTTGGATTATAAACAGCTTATATGCAGGAAAATTGCTTCCTTCACCACAACTTAAATTTCCAGACCAAGCGGTTCAAGTGGAAATGAGTGAAGAAATATGA 2508 40.19 MKRSLLGFHPPHFSEEEAWLPAWLHPCNQPSSSSQEIGRLQENIVPTQNGNLSNDGTCKSLRLFLSGDDDNSPMSFPSSSTNHQVRYRLCLSSTEESQYSLNPSKSKVIPDEGKLVITQPKSLTFKEQTETNVKVDDTCQETDISNAIELAVAASEALTIHKVLKDELLVASSVLEAAVRLKQARLENSRENLGSALEESGEVDFDFFSDLDYLTMADAYEDVGLTVANHGDPSAYCSVSHVNDTFGSENYTSNAKHEGNILSKGFVLESCERVARKERLDYESLGTENADLACDVDPVFNCSVEQADFCATEAGLQKEGFSVEDITTSQTILRSNERQSKMTSLVPDRFQSRWFGGWTLKNDESIPTVANDKHKHTTNELFANETSSLSESADIAPDMSSCVQIRQDKDTTVSQSSVVLQHAYENTDNDKNLIPGDVALSPNVSPMDPMCSVVPCSYASDSVASQNTEQQENLNNHPLPMVQPNLDNIELNRESSPTIHRQVTSLKTYSMLYPTCAPYLDNEHTRVEPSSFKHNQTAEADTALTGQHEKETTKVSQKVESIVPRRKRVRFSETEICYRQVKKFQKAPQALFKDPSVAGRICRRVTRSKFKPREVKKTNKTLLQDLKFLLTGFSVKKHKQIKNLIQENGGIVFDDIPSISRRKKTSKHPLILCPKKLLTTKFLYGCAISASILKITWLFDSVDEGLILPHKKYTVLNDHATDNHLIFEDIAIMLHGKQDFCSKMGKVVKHGGGSVFKTFHWLIKSLDSKKVSVGVIVVEDENGISRQLKQCALEQKISVMPYSWIINSLYAGKLLPSPQLKFPDQAVQVEMSEEI 835
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g02033 835 Gene3D BRCT domain 717 822 IPR036420 -
Bial10g02033 835 SMART BRCT-7 620 705 IPR001357 -
Bial10g02033 835 SMART BRCT-7 724 812 IPR001357 -
Bial10g02033 835 Gene3D BRCT domain 605 716 IPR036420 -
Bial10g02033 835 MobiDBLite consensus disorder prediction 540 559 - -
Bial10g02033 835 Pfam BRCA1 C Terminus (BRCT) domain 726 816 - -
Bial10g02033 835 MobiDBLite consensus disorder prediction 544 559 - -
Bial10g02033 835 Pfam BRCT domain, a BRCA1 C-terminus domain 622 713 IPR001357 -
Bial10g02033 835 ProSiteProfiles BRCT domain profile. 618 715 IPR001357 -
Bial10g02033 835 ProSiteProfiles BRCT domain profile. 722 822 IPR001357 -
Bial10g02033 835 PANTHER TUMOR SUPPRESSOR P53-BINDING PROTEIN 1 11 555 IPR047252 GO:0000077(PANTHER)|GO:0005634(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Bial10g02033 835 SUPERFAMILY BRCT domain 726 818 IPR036420 -
Bial10g02033 835 SUPERFAMILY BRCT domain 622 715 IPR036420 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g02033 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
180853 Bial10g02033 Bial22g01570
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr14:1597904 Bial10g02033 Bial-Chr10:21734433 transposed
Bial Bial-Chr10:21734433 Bial22g01570 Bial-Chr22:16821760 wgd