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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial10g02035 ATGCTGGGTGGGTTATACGGCGACCTACCTCCACCTTCATCCACAGACGATGATTCCAACACCACCACCACCAAACCCTCAAACCCCTCATCCAATGTCTGGTCAAGCTCCGTTAAAATGGCCCCACCAACTCTCCGAAAGCCATCTGCTTTATCTTCTTCTTCGCATCCCAAAACCCTAATCAAACCCAAATCCAGACCACCCCCAATTCTTGATTCTACTACCCAAAACACTAACCCCACCTTCCAACCGGCCCTTGTCGGTGTCCCGTCTTCCGTAGTCGAAGAATACGACCCCGCGAGACCCAACGATTACGAGGAGCTGAAACGGGAGCGAAAGCGGAAGGCGGCCGAGGCGGAGATCAAGAGGGAGATGGACCGAAGGCGAAAAGAGGAGGAGGAGAGGGAAAAGAGGGAGATTAAGGATAAGGAGAGGGAGAGGGAGGCTAATATTAATGTTAATATTAATTTATCGGGTGAGGAGGCGTGGAAGCGACGGGCAGCGATGAGCGGCGGTGGGGATCGGGAACGGGATGAGGGTGGGGATGGGTTTAGTATAGAGAAGAGTGAGACGGGTGGGTTAGGGGTTGGGGCGGGCGGGCAGATGACTGCGGCGCAGAGGATGATGGCGAAGATGGGGTGGAAGGCCGGGCAGGGGCTGGGGAAACAGGAGCAGGGGATTACGACGCCGTTGGTGGCGAAGAAGACGGATAGGCGGGCTGGGGTGATTGTGAATGCGGGTGAGGCTAAGCAGCAGGTGGAGAAGAAAACCAGAGGGGTTAGTATTAATGGGACGCCCACTCGCGTTGTGCTGCTTCGGAACATGGTGGGCCCAGGGGAGGTAGATGATGATCTAGAATCCGAGGTTGCAGAGGAATGCTCAAAATATGGAACAGTGACAAGGGTGTTGATATTCGAAATAACCGAGCCTAGTTTTCCGGTTGATGAAGCCGTTAGAATATTTGTGCAGTTTGAGAGATCAGAGCAAGCAACAAAAGCACTTGTAGATCTTGAAGGTCGGTTTTTTGGTGGGAGAGTTGTGCGTGCTACTTTTTATGATGAAGAAAGGTTCAACACCAATCAGTTGGCTCCAATGCCTGGGGAAATCCCAGGTTTTATATAA 1122 52.58 MLGGLYGDLPPPSSTDDDSNTTTTKPSNPSSNVWSSSVKMAPPTLRKPSALSSSSHPKTLIKPKSRPPPILDSTTQNTNPTFQPALVGVPSSVVEEYDPARPNDYEELKRERKRKAAEAEIKREMDRRRKEEEEREKREIKDKEREREANINVNINLSGEEAWKRRAAMSGGGDRERDEGGDGFSIEKSETGGLGVGAGGQMTAAQRMMAKMGWKAGQGLGKQEQGITTPLVAKKTDRRAGVIVNAGEAKQQVEKKTRGVSINGTPTRVVLLRNMVGPGEVDDDLESEVAEECSKYGTVTRVLIFEITEPSFPVDEAVRIFVQFERSEQATKALVDLEGRFFGGRVVRATFYDEERFNTNQLAPMPGEIPGFI 373
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial10g02035 373 PIRSF SPF45 3 369 IPR040052 GO:0045292(InterPro)
Bial10g02035 373 SMART G-patch-5 199 245 IPR000467 GO:0003676(InterPro)
Bial10g02035 373 MobiDBLite consensus disorder prediction 1 144 - -
Bial10g02035 373 MobiDBLite consensus disorder prediction 167 185 - -
Bial10g02035 373 CDD RRM-UHM-SPF45 266 362 IPR034653 -
Bial10g02035 373 PANTHER SPLICING FACTOR 45 SPF45 76 364 IPR040052 GO:0000398(PANTHER)|GO:0045292(InterPro)|GO:0071011(PANTHER)
Bial10g02035 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 354 IPR000504 GO:0003723(InterPro)
Bial10g02035 373 MobiDBLite consensus disorder prediction 13 39 - -
Bial10g02035 373 SUPERFAMILY RNA-binding domain, RBD 270 357 IPR035979 GO:0003676(InterPro)
Bial10g02035 373 ProSiteProfiles G-patch domain profile. 201 247 IPR000467 GO:0003676(InterPro)
Bial10g02035 373 Pfam G-patch domain 203 243 IPR000467 GO:0003676(InterPro)
Bial10g02035 373 MobiDBLite consensus disorder prediction 99 144 - -
Bial10g02035 373 FunFam Putative splicing factor 45 267 353 - -
Bial10g02035 373 SMART rrm2-1 269 350 IPR003954 GO:0003676(InterPro)
Bial10g02035 373 MobiDBLite consensus disorder prediction 69 86 - -
Bial10g02035 373 Pfam RNA recognition motif 286 348 IPR000504 GO:0003723(InterPro)
Bial10g02035 373 Gene3D - 263 362 IPR012677 -
Bial10g02035 373 Coils Coil 105 150 - -
Bial10g02035 373 MobiDBLite consensus disorder prediction 167 198 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial10g02035 K12840 splicing factor 45
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Event-related genes

Select Gene_1 Gene_2 Event_name
180855 Bial10g02035 Bial22g01573
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:21748457 Bial12g02912 Bial-Chr12:59084068 dispersed
Bial Bial-Chr10:21748457 Bial22g01573 Bial-Chr22:16836182 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bial12g01218 . 219 571 U2AF65A gene family AT4G36690 70.506 2.41e-176 504.0
Bial12g01219 WGDA 30 571 U2AF65A gene family AT4G36690 70.31 0.0 716.0
Bial11g02177 WGDA 190 571 U2AF65A gene family AT4G36690 81.137 0.0 648.0
Bial11g02178 . 29 97 U2AF65A gene family AT4G36690 52.439 6.12e-10 56.2
Bial12g02912 BST,WGDA 169 573 U2AF65A gene family AT4G36690 69.065 0.0 577.0
Bial12g03003 . 169 331 U2AF65A gene family AT4G36690 28.144 7.16e-14 72.0
Bial12g03004 BST,WGDA 375 515 U2AF65A gene family AT4G36690 28.477 5.38e-07 48.9
Bial19g03413 ACH,BST,WGDA 227 413 U2AF65A gene family AT4G36690 22.335 6.86e-06 47.8
Bial23g01915 . 1 571 U2AF65A gene family AT4G36690 64.975 0.0 719.0
Bial12g02049 BST,WGDA 7 104 U2AF65A gene family AT4G36690 42.157 4.31e-07 50.1
Bial6g02897 BST,WGDA 363 432 U2AF65A gene family AT4G36690 41.429 1.07e-08 55.8
Bial19g03778 . 7 104 U2AF65A gene family AT4G36690 41.121 3.42e-07 50.4
Bial19g03745 . 361 558 U2AF65A gene family AT4G36690 25.561 1.53e-07 52.0
Bial7g03852 . 361 558 U2AF65A gene family AT4G36690 25.778 9.17e-07 49.3
Bial7g03883 . 7 104 U2AF65A gene family AT4G36690 41.121 3.42e-07 50.4
Bial24g02750 BST,WGDA 169 573 U2AF65A gene family AT4G36690 57.082 3.51e-169 488.0
Bial24g02834 BST,WGDA 169 513 U2AF65A gene family AT4G36690 25.627 6.95e-24 105.0
Bial17g00587 BST,WGDA 343 468 U2AF65A gene family AT4G36690 30.075 1.47e-11 62.8
Bial17g00585 . 343 468 U2AF65A gene family AT4G36690 30.597 2.98e-12 64.7
Bial10g02035 BST 452 566 U2AF65A gene family AT4G36690 28.696 2.82e-07 50.4
Bial24g01902 BST,WGDA 7 107 U2AF65A gene family AT4G36690 44.66 1.40e-06 48.5
Bial22g01573 BST 452 566 U2AF65A gene family AT4G36690 28.696 3.05e-07 50.4
Bial15g01806 WGDA 29 99 U2AF65A gene family AT4G36690 44.0 2.05e-08 55.5
Bial14g02644 BST,WGDA 362 432 U2AF65A gene family AT4G36690 40.845 7.32e-09 56.2