AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial12g02339 ATGCTGTGTCTACCTTTACAATCCACCTCTCCACACCCTTTAACCCACTCGGGTTCACAAACCCAAATGCTCAAATTCGTACCAACACCAAAATTCGTTCATTTTCACCATCGTAGTAAACTATCAAATAATATCATTCACAGGAGCCATGGGTACACCCCTTGCCCTTGTTCCAATTCGGAGTTAACTTTAACTTCGACCGAAGAAGAGTTTGACATGGAATTAGGGCGTATGTTGAGGCTGTTGCCGGAGGAGATGCGGCGGAGGGTTAACGAGCATCACGAGCTTCATCAATTGATTGAAGTGGTTATGGATTTGGGCCGGAAACCCTTGGCTCGGTTTCCGTCTGGTGATTTTGTGTTGTCGGATAATTTGATCACGGTTGATGATCTCGAACACGCGATTTCTTTGGTGGGTGATTTTGCTATCGATAACCGAGCGGGAATTAGTAGGACTTTGCACCGGATAAGCGCCATTAGAAACCGGAAGGGGACGATAATTGGGCTCACGTGTCGTGTGGGTCGAGCAGTATCCGGAAGTGCGAAGTTGTTGCAAGATTTGGTTAAAGATGGGGCTTCTTTGTTGCTTATTGGACCTCCAGGAGTTGGAAAAACAACTATTATTAGGGATGTAGCTCGAATGCTTGCAAATGATTATAATAAACGTGTAATGATTGTTGATACTTCGAATGAGATTGGTGGAGACGGTGATATCCCGCATGCAGGTATAGGGAATGCTCGACGGATGCAAGTACCTGATTGTGACATGCAACATAAGGTATTAATAGAAGCAGTTGAAAACCATATGCCTCAAGTGATAGTAATTGATGAAATCGGTACAAAACTTGAAGCAGCAGCTGCAAGCACAATTGCACAACGTGGGATTCAGTTAGTTGCAACCGCTCATGGTATTACAATTGAGAATTTAGTGATGAATCCTTCATTGGATATGCTTGTTGGAGGAATACAGAGTGTGACATTAGGAGATGAAGAGGCGAACCGAAGGGGTGTGCAGAAATCAGTGTTGGAGAGAAAAGGTCCTTCAACGTTTGATTGTGCAGTTGAGATTATTTCTAGAGTTGAGTTGAGAGTTCATGGTAGTTTGGAAGCAACCGTTGATGCGATTCTTGCTGGTCGTTCTCCAAATTATCAAATTTGCAAGTTGAATCAAGGAGTGATGGATGTTACATTACAAAATGATCAAAATCCAATTGCATATGAAGCATTTGTCAAGAAAAGTGTCTCCACGATTGAAGGCATTCCACAATGGACCAATGAGAAGCTTACACCTGTCAAACACATTTCTCAAGAGCCTCAAATTGATACAGATAGTTCAAATGATAAGCCATCCTTGTTTCTATATCTCTATGGCGTTTCGGAGACAAGTGCAAGACAAGTATTTAAACATTTAAAGATGGAATCTGTTGTTGAATATACTGATAATATTAGTGAAGCGGATGCAATACTTGCATTATTATCTAGAATCAAGAAAAATACTCGGATTCAGGCTGCTGCGCATTCTAATGACATACCTATTTATGTCACGAAGACGAGTGCGTTGACACAGATAACAAATGCCATAGAGGCATTAGTGACTGATTATGAAAATGGTTTTGAAGATAGTGAAGATGAATATTCTCAGATAAATGAATCAGAGAAGGCTGATGCATTGGAGGAAGCGAGGATTGCAATTGAACAGGTTGTAATCCCAAAAGGTGAACCTGTAGAATTACTTCCAAGGCAATCCAATATTCTGTTGCTTCAAAAGGAGCTAATTCGTAAATATAAGCTACAAGCACAGAGAGTCGGTTCAGATGCGGATGAACGGCTTCGTATTTTACCATTTCAAGCAGAAAAACAAGATAAACATGATGATGATAGTGCTGATCATGTTGTTGATGATGATGATGAACTTAACGAGTTGTCTAAAGCAAATGGCTCACCCTATCCGGTGACCAGATTGCCTTTTCTGCCTGACTAG 1980 41.26 MLCLPLQSTSPHPLTHSGSQTQMLKFVPTPKFVHFHHRSKLSNNIIHRSHGYTPCPCSNSELTLTSTEEEFDMELGRMLRLLPEEMRRRVNEHHELHQLIEVVMDLGRKPLARFPSGDFVLSDNLITVDDLEHAISLVGDFAIDNRAGISRTLHRISAIRNRKGTIIGLTCRVGRAVSGSAKLLQDLVKDGASLLLIGPPGVGKTTIIRDVARMLANDYNKRVMIVDTSNEIGGDGDIPHAGIGNARRMQVPDCDMQHKVLIEAVENHMPQVIVIDEIGTKLEAAAASTIAQRGIQLVATAHGITIENLVMNPSLDMLVGGIQSVTLGDEEANRRGVQKSVLERKGPSTFDCAVEIISRVELRVHGSLEATVDAILAGRSPNYQICKLNQGVMDVTLQNDQNPIAYEAFVKKSVSTIEGIPQWTNEKLTPVKHISQEPQIDTDSSNDKPSLFLYLYGVSETSARQVFKHLKMESVVEYTDNISEADAILALLSRIKKNTRIQAAAHSNDIPIYVTKTSALTQITNAIEALVTDYENGFEDSEDEYSQINESEKADALEEARIAIEQVVIPKGEPVELLPRQSNILLLQKELIRKYKLQAQRVGSDADERLRILPFQAEKQDKHDDDSADHVVDDDDELNELSKANGSPYPVTRLPFLPD 659
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial12g02339 659 Gene3D - 167 372 IPR027417 -
Bial12g02339 659 FunFam uncharacterized protein ycf45 isoform X2 155 372 - -
Bial12g02339 659 CDD AAA 191 280 - -
Bial12g02339 659 Pfam Sporulation stage III, protein AA 166 320 IPR045735 -
Bial12g02339 659 CDD R3H-AAA 555 614 IPR034081 -
Bial12g02339 659 SMART AAA-5 190 321 IPR003593 GO:0016887(InterPro)
Bial12g02339 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 333 IPR027417 -
Bial12g02339 659 MobiDBLite consensus disorder prediction 617 659 - -
Bial12g02339 659 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 559 577 - -
Bial12g02339 659 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 198 217 - -
Bial12g02339 659 PANTHER KINASE-RELATED 36 577 - GO:0009507(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial12g02339 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
184683 Bial12g02339 Bial24g02199
363332 Bial12g02339 Bial24g02199
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr12:29864304 Bial12g02339 Bial-Chr12:53669894 dispersed
Bial Bial-Chr12:53669894 Bial24g00595 Bial-Chr24:27903460 dispersed
Bial Bial-Chr12:53669894 Bial24g02199 Bial-Chr24:52541799 wgd