AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial12g02341 ATGGCGACTCGCGTTCTCCTACGCACTCTTCGCAATCAAACCCTAATCCGTCGTTCCTTCCGTCCTATCGCCGCCATTGCCACCGCTAATTTCCACCAGTCTTCCGTCGCAGCCGCCGATGTCCGTGCGTTCTCAACTCGTCCGACAACATCTTCTCTGAACGATTCGAACCCTAATTGGTCCAATCGTCCCCCAAAGGAAACCATTCTTCTCGACGGCTGTGATTTTGAGCACTGGCTTGTTGTTGTCGACAAACCTGAAGGCGAGCCTACAAGAGATGAGATTATTGATTCGTATATTAATACCCTGGCTAAGGTCATTGGCAGTTATGATGAAGCAAGGATGAAAATCTACTCGGTTTCGACCAGATGCTATTTTGCATTTGGAGCTCTTGTGTCTGAAGAACTTTCTTACAAGCTTAAGGAATTACCTGGAGTTCGTTGGGTGCTTCCTGATTCTTACTTGGATGTTAAGAACAAGGATTATGGAGGTGAACCGTTTATTGATGGGAAGGCTGTTCCATATGATCCAAAGTACCATGAAGAATGGATCAGAAATAATGCCCGTGCTAACGAGAGAAACAGGAGGAATGATAGGCCTCGCAACGACAGATCTAGGAACTTTGAGCGAAGACGAGAGAACATGCAAAGCAACCGGGGTCCGCCCAATAACATGGACGGTCCACCTTCTAATATGAGGCCACAAGGTCCGCCACCGCCATCTTACAATGCTGGGCCGCAAGGGCCACCTCCACCACCCTATAACGGAGCTCCACAAGGTCCACCACCACCAACCTATAGCGGAGCACCACAAGGTCCACCACCACCAACCTATAACGGAGCGCCACAAGGTCCACCAACGCCACCCTATAACAAAGCGTCACAAGGTCCACCACCACCAACCTATAACAAAGCGCCACAAGGTCCATCACCACCAACCTATAACGGGGCGCCACAAGGTCCACCACTACCCTACAACGGAGCGCCACAAGGTCCACCACCATCCTACAACGGAGGTCCTCGAGGTCCACCACCACCTTACAATGGAGGGCCACAAGGACCATCTCCACCACCCTACAATGGTGGGCCACCAAACATGGGATATCAAAACAATGGATGGACGCCTAATAATGGTCCCAACTATCAGCAGCAGCAGCAGCAGTATGGGCCCAACAGTGGAAGAATGGGCTACCAGCAATCTGGGCCTGTGCCCAACAATTATCCTCCGAATTCTAACCCTTACCAGTCCCAGGATGTTCCTGGAAGAGACATGCCCTCTGCGGCCAACTACGAATGA 1296 51.16 MATRVLLRTLRNQTLIRRSFRPIAAIATANFHQSSVAAADVRAFSTRPTTSSLNDSNPNWSNRPPKETILLDGCDFEHWLVVVDKPEGEPTRDEIIDSYINTLAKVIGSYDEARMKIYSVSTRCYFAFGALVSEELSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNDRSRNFERRRENMQSNRGPPNNMDGPPSNMRPQGPPPPSYNAGPQGPPPPPYNGAPQGPPPPTYSGAPQGPPPPTYNGAPQGPPTPPYNKASQGPPPPTYNKAPQGPSPPTYNGAPQGPPLPYNGAPQGPPPSYNGGPRGPPPPYNGGPQGPSPPPYNGGPPNMGYQNNGWTPNNGPNYQQQQQQYGPNSGRMGYQQSGPVPNNYPPNSNPYQSQDVPGRDMPSAANYE 431
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial12g02341 431 MobiDBLite consensus disorder prediction 227 363 - -
Bial12g02341 431 MobiDBLite consensus disorder prediction 364 419 - -
Bial12g02341 431 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 21 216 IPR039206 GO:0005739(PANTHER)|GO:0016554(InterPro)|GO:0080156(PANTHER)
Bial12g02341 431 MobiDBLite consensus disorder prediction 191 216 - -
Bial12g02341 431 PRINTS Proline rich extensin signature 240 261 - -
Bial12g02341 431 PRINTS Proline rich extensin signature 269 285 - -
Bial12g02341 431 PRINTS Proline rich extensin signature 296 313 - -
Bial12g02341 431 PRINTS Proline rich extensin signature 322 347 - -
Bial12g02341 431 PRINTS Proline rich extensin signature 227 239 - -
Bial12g02341 431 MobiDBLite consensus disorder prediction 191 431 - -
Bial12g02341 431 Pfam Multiple organellar RNA editing factor 1, MORF domain 76 167 IPR054059 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial12g02341 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
25199 Bial12g02341 Bial3g03208
184684 Bial12g02341 Bial24g02201
363333 Bial12g02341 Bial16g02686
363334 Bial12g02341 Bial24g02201
363335 Bial12g02341 Bial4g03317
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr12:49657550 Bial12g02341 Bial-Chr12:53707571 dispersed
Bial Bial-Chr12:53707571 Bial13g02067 Bial-Chr13:27501033 dispersed
Bial Bial-Chr12:53707571 Bial16g02686 Bial-Chr16:69497746 wgd
Bial Bial-Chr12:53707571 Bial24g02201 Bial-Chr24:52579467 wgd
Bial Bial-Chr12:53707571 Bial3g03208 Bial-Chr3:76641543 wgd
Bial Bial-Chr12:53707571 Bial4g03317 Bial-Chr4:75825562 wgd