AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial12g02344 ATGGCGGACGAGAAAGAGGTGAAGGAAGTAGTTGAAGAGAAGAAGAATGATAAGAATAATAATAATGATAAGAAGAAGAAGAAAGGTGTGCTGTCTCGGATTTGGAATGCGGTGTTTGGATTACGTGGTGATGATTTTGAGAAGAGGCTGCAATACATATCGAAAGAAGAAGCTACTCTTCATAACAGGATTAAAAGGAGATCTATGAGATGGAGAAGAACTGCCAGGAATCTGATTATCTTTTCGGTTATACTTGAGTTGGTTGCAATCGGTTATGCTATAATGACCACAAGAACAATAGACATGGATTGGAGAATAAGATCATTGCATGTGCTACCTATGTTTCTTTTGCCTGCGTTATCGTTTGGTTTGCATTATGGGCTTTCAAGATTCACCAAATATTGTGATCGAAGGGATCACAAAGCATTAGAGAAGCTTCAAGAAGAAAGACAAGCAAAAATTGATGAACTTAAAGAGAGAAATAATTATTACATCACTCAGCAACTCATTCAGAAATATGACCCGGATCCAGCAGCAAAAGCGGCTGCTGCATCGGTTCTTGCATCAAAACTTGGTGCAGATTCGGGCCTGAAAGTGTTTCTTGAACACGAATTACAACCGAACACATATGACACGGGAAAAAGCAGTGATTTTGAGCTTCAACAATCTACTGGTCTCAGAAAACGAAATCAATCAAACCCTAAATCTCCTGGAAGCAATTCTGGTCAACAATCTGATAAACAAACGCCTCAATTTGGAGGAAACGAGGTTTCTGAGAGTTTAACATATGATAATCTTGTTGTTGAGCATCATGATCCTGCAGATGCAGGTTCTCAAGATGGCAGTTGGCTTGCTAAAATTGCTGCATTGCTTGTGGGAGAGGATCCTACTGATTCTTATGCACTTATATGTGGAAATTGCCATATGCATAATGGTCTTGCAAGAAAAGAGGATTTCCCATTTATTACTTACTACTGTCCGCATTGTCGCGCGTTAAACAAACCAAAGAATTCGGGTTCTTCGGATACAATAGCAAGTGCGGATGTTAAGTTGATTGAAGATAGTAACGAGTCAACGGGTGAGAAAGTATCTGCTGTTAGCAGTGGCGTGGTAGCTACGGTGGAGGAGAAGGAAGCAATTGAGGAAACGGTTGTTGCGTAG 1161 40.31 MADEKEVKEVVEEKKNDKNNNNDKKKKKGVLSRIWNAVFGLRGDDFEKRLQYISKEEATLHNRIKRRSMRWRRTARNLIIFSVILELVAIGYAIMTTRTIDMDWRIRSLHVLPMFLLPALSFGLHYGLSRFTKYCDRRDHKALEKLQEERQAKIDELKERNNYYITQQLIQKYDPDPAAKAAAASVLASKLGADSGLKVFLEHELQPNTYDTGKSSDFELQQSTGLRKRNQSNPKSPGSNSGQQSDKQTPQFGGNEVSESLTYDNLVVEHHDPADAGSQDGSWLAKIAALLVGEDPTDSYALICGNCHMHNGLARKEDFPFITYYCPHCRALNKPKNSGSSDTIASADVKLIEDSNESTGEKVSAVSSGVVATVEEKEAIEETVVA 386
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial12g02344 386 Coils Coil 1 28 - -
Bial12g02344 386 MobiDBLite consensus disorder prediction 224 256 - -
Bial12g02344 386 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 23 365 IPR040115 GO:0071782(PANTHER)|GO:0071786(PANTHER)|GO:0071786(InterPro)
Bial12g02344 386 MobiDBLite consensus disorder prediction 1 25 - -
Bial12g02344 386 Coils Coil 140 163 - -
Bial12g02344 386 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 283 333 IPR019273 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial12g02344 K23292 endoplasmic reticulum junction formation protein lunapark
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Event-related genes

Select Gene_1 Gene_2 Event_name
25200 Bial12g02344 Bial3g01746
25201 Bial12g02344 Bial3g03205
184685 Bial12g02344 Bial24g02204
363336 Bial12g02344 Bial16g02715
363337 Bial12g02344 Bial24g02204
363338 Bial12g02344 Bial4g03335
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr12:53724517 Bial4g03335 Bial-Chr4:76089711 dispersed
Bial Bial-Chr12:53724517 Bial16g02715 Bial-Chr16:69966127 wgd
Bial Bial-Chr12:53724517 Bial24g02204 Bial-Chr24:52596417 wgd
Bial Bial-Chr12:53724517 Bial3g01746 Bial-Chr3:60382793 wgd
Bial Bial-Chr12:53724517 Bial3g03205 Bial-Chr3:76619953 wgd
Bial Bial-Chr12:53724517 Bial4g03334 Bial-Chr4:76086036 wgd