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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial12g02368 ATGCTAGGAGAAGTTGCAGCAGCTGTTCCCAGATCACTCTGGCCACTTCAACCTCACCGAAAACTCGAATCCTCAATACCAATATCAGTTTCAATCCCAAAAATTAGAACCCGATTTCCACAAGCAGTTAAAACTTTCTCCCTGCAAAAATATACCAATGCCCGCCTTCGTACCTTCTCGGTTAACGCTGCGGCTGCTTCTTCAGTAGGAAATGCAGACTATGCTGAAGAACCAGCTACAAATGTGAAGTTTCAGACATCATTGGATCTTCCTGGTTGCTCGACTTCGTTATCGTTGATCGGAACAGGATTCCGGGAGAAAGTGTTTGCAATAATCGGCGTTAAGGTTTATGCTGCCGGTTTATACCTAAACCCGAATATCTTGGAGAGTCTAAACCCCTGGAAAGGAAGTACAGCACCTGAAATTGAGCAAGATTCGTCATTGTTTGACTTAATTTATAAGGCTCCTTTGGAGAAATCATTGCAAATCGTTTTGGTTAGAGATATCGATGGAAAAACGTTCTGGGATGCTCTAGACGAGGCCTTATCACCCAGAATCAAATCACCGAATTCCATTGATAAAACAGCTCTATCCGCATTTCGTGGTATCTTTCAAAACCGACCGTTAAAGAAAGGAACTTTCATATTTTTGACATGGGTTGATCCTTCAAAAATGCTGGTTCATTTATCTAGTGGCGGGTTTCCATCGGCTGTAGAAGCTACGATTGAGTCAGAAAGCGTGACGGCTTCTCTCTTTGATGTATTTTTTGGGCTTGCACCGGTTTCTCCTACATTAAAATCTTCAATAAGCAATAGCTTGGCTTCGTTTCTCAACTAA 837 42.29 MLGEVAAAVPRSLWPLQPHRKLESSIPISVSIPKIRTRFPQAVKTFSLQKYTNARLRTFSVNAAAASSVGNADYAEEPATNVKFQTSLDLPGCSTSLSLIGTGFREKVFAIIGVKVYAAGLYLNPNILESLNPWKGSTAPEIEQDSSLFDLIYKAPLEKSLQIVLVRDIDGKTFWDALDEALSPRIKSPNSIDKTALSAFRGIFQNRPLKKGTFIFLTWVDPSKMLVHLSSGGFPSAVEATIESESVTASLFDVFFGLAPVSPTLKSSISNSLASFLN 278
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial12g02368 278 SUPERFAMILY Chalcone isomerase 74 278 IPR036298 GO:0016872(InterPro)
Bial12g02368 278 PANTHER FATTY-ACID-BINDING PROTEIN 3, CHLOROPLASTIC 47 277 - GO:0005504(PANTHER)|GO:0006631(PANTHER)|GO:0009570(PANTHER)
Bial12g02368 278 Pfam Chalcone-flavanone isomerase 81 274 IPR016087 -
Bial12g02368 278 Gene3D - 84 255 IPR016088 -
Bial12g02368 278 Gene3D - 127 273 IPR016089 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial12g02368 K01859 chalcone isomerase [EC:5.5.1.6]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr12:53990472 Bial24g02226 Bial-Chr24:52845127 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bial8g01340 BST 22 221 CHI gene family AT3G55120 27.723 1.24e-14 68.9
Bial12g02251 BST,WGDA 13 238 CHI gene family AT3G55120 62.555 4.78e-103 296.0
Bial12g02252 BST,WGDA 17 224 CHI gene family AT3G55120 45.192 3.33e-50 160.0
Bial12g02253 WGDA 19 224 CHI gene family AT3G55120 44.175 1.07e-47 154.0
Bial12g02368 . 23 224 CHI gene family AT3G55120 23.786 1.72e-06 46.2
Bial19g03405 ACH,BST,WGDA 13 224 CHI gene family AT3G55120 52.83 1.01e-75 228.0
Bial24g02108 BST,WGDA 13 231 CHI gene family AT3G55120 63.47 5.39e-103 296.0
Bial24g02109 BST,WGDA 17 224 CHI gene family AT3G55120 58.654 1.06e-83 247.0
Bial20g01206 BST 22 221 CHI gene family AT3G55120 27.723 1.24e-14 68.9
Bial7g03432 ACH,BST,WGDA 13 224 CHI gene family AT3G55120 52.83 9.99e-76 227.0