AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial12g02710 ATGGATTCGGTTAAGCTCTGGCCCCCGGGCCACAGCACGAGGCAAATACTCGTGGATCGTATTCTAAGAAACCTCACAACACCATCCATATTAACAAGAAAATACGGGCTTTTAAGCAAAGAAGAAGCAGAAGAAGATGCTAAACAAATCGAATCCGCTGCGTTTGCAGCCGCATCCCAACAATTTGAAAAATACCCTGATACTGATGGCGGGTCCGCGATCCAAGTCTATGCTAAAGAATCTAGCAAACTCATGGTTGAAGTCATCAAAGCCGGGCCCAAACATAAAGAAGACCGAGACACAGTAACAGAGTTGACCACATTTGACAACGAACACGTGTTCGACATCTCTGGAGGCCGTCGGGCCTTCATAGATGCCGAAGAAGCTAAAGAGTTGCTAAAACCGTTAAAAGAGCCCGGAAACAAATTTACTAAAATCCGTTTTAGTAACAGAAGTTTTGGGCTCCCTGCAGCCCATGTGGCTGCATCGGTTTTGTCAATGGTCAAAGACCAGTTGACCGAGGTTGACTTGTCTGATATTGTTTCGAGGCGGCCCGAGCCAGAGGCGGTTCAGGTTATGAAGATGTTTTCAACAGCACTTGAGGGTAGTAATTTGAGTTATTTAAATTTGTCTAATAATGCTTTGGGTGAAAAGGGGGTTAGGGCATTAGGGGGGCTTTTGAAGTCTCAAGGGAGTCTTGTTGAGTTGTATTTTATGAACGCGGGTATATCGCAAGAGGCTGCGAAGGCGGTATGCGAGTTGATTCCTTCGACTAGTAAACTTAAGATTCTTCATTTTCATCATAACATGACGGGAGATGAAGGCGCGGTTGCTATTGCGCAACTCGTTAAAGGGTCTCCAAATCTAGAGGATTTCAGGTGTTCTTCATCAAGGATTGGGTCAGTAGGGGGTGTTGCACTAGCCGAAGCACTTAATACATGTACCCTTTTGAAAAAACTCGACTTACGTGACAACATGTTCGGACCAAAACCAGGCGTCGCGTTAAGTCAAACACGCCACACAAACCTTACTGAAATCTACCTAAGTTACTTAAATTTAGAAAACGAAGGAACCATAGCCCTTGCAAAAGCCCTAAAACAACTCGATTCTACCCTTGAAGTAATTGAAATGGCGGGAAACAACATCACTTCAGAAGCCGCAGCAAAAGCTTTAGCCGAATGTTTAATCTCAAACAAACATTCTCTAACGCGGATAAACTTATCTGAAAATGAATTAAAAGACGCAGGTGCGATGATGATTGCTAATGCACTTGGTGACGGGTTTGGGGAGTTGTGTGTGGTTGATTTGAGCGCCAATGGGGTTGAGACAGGTGGCGCCGTGGCATTGGCTAAAGCGGTTGTGGGGAAACCGGGGTTTAGGTTGTTAAATATAAATGGTAACTTTTTGTCTTATGATGGTGTTGAGGTTGTTAAAGGGATCTTTAAGGATTTTCCTCGTATGCTTGGACCACTTGATCAGAACGATCCTCGTGGTCATGAGCTTGATGAACTTCAGTCGAAGCTTAAGGATCTTGAAATGAAGCGAAAAGATTAA 1554 44.21 MDSVKLWPPGHSTRQILVDRILRNLTTPSILTRKYGLLSKEEAEEDAKQIESAAFAAASQQFEKYPDTDGGSAIQVYAKESSKLMVEVIKAGPKHKEDRDTVTELTTFDNEHVFDISGGRRAFIDAEEAKELLKPLKEPGNKFTKIRFSNRSFGLPAAHVAASVLSMVKDQLTEVDLSDIVSRRPEPEAVQVMKMFSTALEGSNLSYLNLSNNALGEKGVRALGGLLKSQGSLVELYFMNAGISQEAAKAVCELIPSTSKLKILHFHHNMTGDEGAVAIAQLVKGSPNLEDFRCSSSRIGSVGGVALAEALNTCTLLKKLDLRDNMFGPKPGVALSQTRHTNLTEIYLSYLNLENEGTIALAKALKQLDSTLEVIEMAGNNITSEAAAKALAECLISNKHSLTRINLSENELKDAGAMMIANALGDGFGELCVVDLSANGVETGGAVALAKAVVGKPGFRLLNINGNFLSYDGVEVVKGIFKDFPRMLGPLDQNDPRGHELDELQSKLKDLEMKRKD 517
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial12g02710 517 Gene3D Ribonuclease Inhibitor 388 488 IPR032675 -
Bial12g02710 517 Pfam WPP domain 3 98 IPR025265 -
Bial12g02710 517 SMART LRR-RI-2 258 285 - -
Bial12g02710 517 SMART LRR-RI-2 399 426 - -
Bial12g02710 517 SMART LRR-RI-2 230 257 - -
Bial12g02710 517 SMART LRR-RI-2 340 367 - -
Bial12g02710 517 SMART LRR-RI-2 456 483 - -
Bial12g02710 517 SMART LRR-RI-2 286 313 - -
Bial12g02710 517 SMART LRR-RI-2 202 229 - -
Bial12g02710 517 SMART LRR-RI-2 369 397 - -
Bial12g02710 517 Gene3D WPP domain 3 101 IPR038214 -
Bial12g02710 517 Gene3D Ribonuclease Inhibitor 120 387 IPR032675 -
Bial12g02710 517 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 3 514 IPR045203 GO:0005096(InterPro)
Bial12g02710 517 Pfam Leucine Rich repeat 204 223 IPR001611 GO:0005515(InterPro)
Bial12g02710 517 Pfam Leucine Rich repeat 399 421 IPR001611 GO:0005515(InterPro)
Bial12g02710 517 SUPERFAMILY RNI-like 105 497 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial12g02710 K14319 Ran GTPase-activating protein 1
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Event-related genes

Select Gene_1 Gene_2 Event_name
184878 Bial12g02710 Bial24g02553
361585 Bial10g01391 Bial12g02710
363591 Bial12g02710 Bial22g00982
363592 Bial12g02710 Bial24g02553
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:13955479 Bial12g02710 Bial-Chr12:57299723 dispersed
Bial Bial-Chr12:57299723 Bial4g01040 Bial-Chr4:12804721 dispersed
Bial Bial-Chr12:57299723 Bial24g02553 Bial-Chr24:56363121 wgd