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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial12g02713 ATGGCGTTCAAGCTATCGTCACTCTCATCCAGTGTCTCACTGGTTCCTGCAAACTCTTCAGTTTCATTTTCGTCAAAGAAATTCTTTCTTCCGGTGAAGTTTAATCAACGGCGGTCTACATTTCCAAGGATTTATGCATTTAATAGTAATGATATTAAAGTGGGTTCCAACATTGAGGTGGATGGTGCTCCTTGGAAAGTTATAGAGTTTCTTCATGTGAAACCGGGTAAAGGGGCGGCTTATGTAAGGACCACGCTACGGAATCACATTACGGGAAACTCGGTTGAGAAAACTTTCAGAGCAGGAAGCAAGATTGAACCAGCTGAGGTCAATAAGGAGACGAAACAATTCACGTACAAGGACGGTTCACAATTCGTTTTCATGGATTTGACTACATACGAGGAAGTTCGTCTTAACGAGTCGGATATGGGGGATAAGACGAAATGGTTAAAAGAAGGCATGGATTGTATCTTGTTGTTTTGGAAGGATAAGGTTATTGATTTTGAGCTCCCAATTCAGGTTAAGGTGAAAGTGGTTGAGGTTGATCCCGGTTTGAAAGGTGACACGGCTCAAGGTGGATCAAAACCCGCTACTGTGGAAACAGGTGCTGTTGTGAATGTCCCATTATTTGTAGACAGAGGTCAAGAAATTATTGTGGATACCAGGACCGGGCAGTACGTGAGTCGCGTTTGA 693 43.15 MAFKLSSLSSSVSLVPANSSVSFSSKKFFLPVKFNQRRSTFPRIYAFNSNDIKVGSNIEVDGAPWKVIEFLHVKPGKGAAYVRTTLRNHITGNSVEKTFRAGSKIEPAEVNKETKQFTYKDGSQFVFMDLTTYEEVRLNESDMGDKTKWLKEGMDCILLFWKDKVIDFELPIQVKVKVVEVDPGLKGDTAQGGSKPATVETGAVVNVPLFVDRGQEIIVDTRTGQYVSRV 230
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial12g02713 230 SMART Elong-fact-P-C-2 174 229 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Bial12g02713 230 PIRSF EF-P 45 230 IPR020599 -
Bial12g02713 230 Pfam Elongation factor P (EF-P) OB domain 116 166 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Bial12g02713 230 Gene3D - 173 230 IPR012340 -
Bial12g02713 230 SUPERFAMILY Nucleic acid-binding proteins 174 230 IPR012340 -
Bial12g02713 230 SUPERFAMILY Nucleic acid-binding proteins 110 174 IPR012340 -
Bial12g02713 230 Hamap Elongation factor P [efp]. 46 230 IPR011768 GO:0003746(InterPro)|GO:0005737(InterPro)|GO:0006414(InterPro)
Bial12g02713 230 PANTHER ELONGATION FACTOR P 24 230 IPR020599 GO:0003746(PANTHER)|GO:0005737(PANTHER)
Bial12g02713 230 SMART EFP-2 112 166 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Bial12g02713 230 Pfam Elongation factor P (EF-P) KOW-like domain 49 105 IPR013185 -
Bial12g02713 230 CDD S1-EF-P-repeat-1 116 171 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Bial12g02713 230 FunFam Organellar elongation factor P 40 108 - -
Bial12g02713 230 Pfam Elongation factor P, C-terminal 174 229 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Bial12g02713 230 SUPERFAMILY Translation proteins SH3-like domain 43 106 IPR008991 -
Bial12g02713 230 CDD S1-EF-P-repeat-2 174 229 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Bial12g02713 230 FunFam Elongation factor P 109 172 - -
Bial12g02713 230 Gene3D - 109 171 IPR012340 -
Bial12g02713 230 NCBIfam elongation factor P 48 230 IPR011768 GO:0003746(InterPro)|GO:0005737(InterPro)|GO:0006414(InterPro)
Bial12g02713 230 Gene3D - 40 108 IPR014722 -
Bial12g02713 230 ProSitePatterns Elongation factor P signature. 195 214 IPR013852 -
Bial12g02713 230 FunFam Elongation factor P 173 230 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial12g02713 K02356 elongation factor P
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Event-related genes

Select Gene_1 Gene_2 Event_name
184881 Bial12g02713 Bial24g02557
361527 Bial10g01252 Bial12g02713
363597 Bial12g02713 Bial22g00844
363598 Bial12g02713 Bial24g02557
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
777556 Bial Bial10g01252 Bial-Chr10:12559982 Bial12g02713 Bial-Chr12:57342538
793150 Bial Bial12g02713 Bial-Chr12:57342538 Bial22g00844 Bial-Chr22:8127649
794736 Bial Bial12g02713 Bial-Chr12:57342538 Bial24g02557 Bial-Chr24:56446209