AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial12g02775 ATGCCGGAGGCGTTGGCGAAGGACGCGATAATCTCGTGGTTCAGAGGCGAGTTTGCTGCGGCGAATGCGATAATTGACGCGTTGTGTGGCCATTTGTCGCAGTTTGAAGGCGGACGACGTGATTATGAGGCGGTGTTTGCCGCTATACACCGTCGTCGGTTGAATTGGATCCCGATTCTGCAGATGCAGAAGTTTTTTTCGATTGCGGATGTCACGACGGAGCTGCAGAAGGTGAAGGTGCAGGCGCCGGTGGTGGAGGTTAAACATGAAGTTGTTGTAGATGTTAATGGTAATGGTGATGGCGGTGGCGAGGTGGTTGATGATGATTCTGTTAAGGATTATTCGCCGAAGAGCGGGATTACTGATGCAGATACTCATGAAGTGCAGTCTACAGTGGAAAAAATTGAAATATGCTCAAACCAAGAAGATTGGGAGGCGAGGCGTGCTGAAATGAAGATAACAAAAGGGTTTACGGCTAAGGAGTCTGTTAAAGGGCATATGGTGAATATGGGGAGAGGGTTGAAGCTATATGATGACGTACTTAGCACGACTGAGCTTTCAAAGTTAACCGACTATGTAACCGATCTCCGAGCCGCTGGCCAAAATGGTGAACTCTCAGGTGAGACCTTTATCATGTACAATCAGCAGTCAAAGTTAATCAAGAGAGAGCTTATTCAGTTTGGAGCTCCTATATTTGGACAGATAAAAGATGATCAAGTTGCCGCTGCTAATAAATCCCAAGACAGCAATATCGACCCGATCCCTGCTCCTCTTGAAGGCGTCATTGATCATCTCATTCAGCTTCGCTTAGTTTCTGAAAATAGACGACCCAACAGTTGCATCATAAACTTTTTTGATGAGGGTGAATTTTCACAGCCGTTCTTGAAACCACCACATTTAGAGCAACCTATCTTGACACTTGTTCTATCCGAGTCAACAATGGCTTTCGGGCGTAGTCTAGTCTGTGACAATGATGGCAACTATAAAGGACCACTCATGCTTTCTCTCAAGGAAGGGTCACTATTAGTGATGAGGGGAAACAGTGCTGACATGGCACGCCACGCGATGTGCCAGTCTCCAACTAAGCGAATCAGCGTCACTTTTTTCAAAGTCCGAGTAGACAATAACCAACCCCCAAAAGATCCCATGGCCGGGGCCATGACCTTGTGGCAGCCTGGTCTTCCAACTCCCATATTAACAGGTGACTCAATTCATGCTGTTCCAAAATGGGCCCCGCAACTTCTTATGTTAGCACCGCTCTCGCCCATGGCTATGAGCCCAAGAAGGTTGCCACGTGGGGGGACTGGTGTTTTCTTACCCTGGAACAATGGGTCAAAAAAGCCGACTAAACATCTACCTCCTCGTGCTCAAAGGGGGAGGCTTTTGGCACTGCCTGCCCCCACTGAACCGCATAAAATGGACCGGTCCGCTGATTCTGGTATTAGTGTTGCTTGA 1455 47.9 MPEALAKDAIISWFRGEFAAANAIIDALCGHLSQFEGGRRDYEAVFAAIHRRRLNWIPILQMQKFFSIADVTTELQKVKVQAPVVEVKHEVVVDVNGNGDGGGEVVDDDSVKDYSPKSGITDADTHEVQSTVEKIEICSNQEDWEARRAEMKITKGFTAKESVKGHMVNMGRGLKLYDDVLSTTELSKLTDYVTDLRAAGQNGELSGETFIMYNQQSKLIKRELIQFGAPIFGQIKDDQVAAANKSQDSNIDPIPAPLEGVIDHLIQLRLVSENRRPNSCIINFFDEGEFSQPFLKPPHLEQPILTLVLSESTMAFGRSLVCDNDGNYKGPLMLSLKEGSLLVMRGNSADMARHAMCQSPTKRISVTFFKVRVDNNQPPKDPMAGAMTLWQPGLPTPILTGDSIHAVPKWAPQLLMLAPLSPMAMSPRRLPRGGTGVFLPWNNGSKKPTKHLPPRAQRGRLLALPAPTEPHKMDRSADSGISVA 484
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial12g02775 484 Gene3D - 157 377 IPR037151 -
Bial12g02775 484 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 6 473 IPR044842 GO:0003729(InterPro)|GO:0006402(InterPro)|GO:0032451(InterPro)
Bial12g02775 484 Pfam 2OG-Fe(II) oxygenase superfamily 279 369 IPR044861 -
Bial12g02775 484 MobiDBLite consensus disorder prediction 462 484 - -
Bial12g02775 484 SUPERFAMILY Clavaminate synthase-like 165 368 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial12g02775 K10767 mRNA N6-methyladenine demethylase [EC:1.14.11.53]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
25266 Bial12g02775 Bial5g01013
184921 Bial12g02775 Bial24g02617
361576 Bial10g01375 Bial12g02775
363658 Bial12g02775 Bial22g00968
363659 Bial12g02775 Bial24g02617
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr12:57810650 Bial16g00864 Bial-Chr16:10880631 dispersed
Bial Bial-Chr10:13791936 Bial12g02775 Bial-Chr12:57810650 wgd
Bial Bial-Chr12:57810650 Bial22g00968 Bial-Chr22:9374184 wgd
Bial Bial-Chr12:57810650 Bial24g02617 Bial-Chr24:56931218 wgd