AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bial12g02880 | ATGATTAAGGAGAAAAAGCTTGATACCCGTTTCCCTGCTGTTCGGATAAAAAAGATAATGCAAGCGGATGAGGATGTCGGGAAGATTGCCATGGCCGTGCCCGTTTTAGTTTCGAAAGCGTTGGAATTGTTTTTGCAAGATCTTTGTGACCGTACGTATAGTATCACTGTTCATAGAGGAGCAAAGACGGTTAACTCGCTGCATTTAAAGCACTGTGTTCAAAGCTACAATATGTTTGATTTTCTGAAAGAAGTTGTTAGCAAGGTCCCTGATTATGGCCACTCGGAAGCTGGTGTTGAAGATCACACCTTGTTAAAAAGAAAGAAAGTTGTTGCTGATGAATTCAATGGAAATGATGAAGAATCAAAGAGAATCCGAGTGAGTGAAGCGGGGCCCACAAGCAGCAGAGGCAGAGGTAGAGGTCGAGGTAGAGGAAGAGGAAGAGGTCGGGGCAGAGGCAGAGTATCTGCAGAACGGGATCTCCCCGTGATTGAACCGGAATCAGAATCTTCAGCATTATCTATTCATAATATCAGCAAGGAACCAGAGGAGCCGGTGGACAACCAATCAGAGTCCATCAAAAGCAAAACTGCAGTCAACATTGATCTAAATGGCGGTTTTGATGGTAATATAGATAAAGGACATGATGCTGCAGATGGCTGTGCAGCACCGTCATCACAACAAGCATTGCCGCCGACAGTTGCAGAAGCTAGTGACGTTGCTAACAGTGAGTATCCTGGGTGGTCGGTTTCAGAAATCGACAGGATGGCTGTTGACCCTGGTCTTGCACGAGTCAACTCGAGGTTGGATGAGGACGATGAAGACTATGATGAAGAATAA | 840 | 45.36 | MIKEKKLDTRFPAVRIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYSITVHRGAKTVNSLHLKHCVQSYNMFDFLKEVVSKVPDYGHSEAGVEDHTLLKRKKVVADEFNGNDEESKRIRVSEAGPTSSRGRGRGRGRGRGRGRGRGRVSAERDLPVIEPESESSALSIHNISKEPEEPVDNQSESIKSKTAVNIDLNGGFDGNIDKGHDAADGCAAPSSQQALPPTVAEASDVANSEYPGWSVSEIDRMAVDPGLARVNSRLDEDDEDYDEE | 279 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bial12g02880 | 279 | MobiDBLite | consensus disorder prediction | 219 | 242 | - | - | |
| Bial12g02880 | 279 | MobiDBLite | consensus disorder prediction | 117 | 193 | - | - | |
| Bial12g02880 | 279 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 6 | 184 | IPR050568 | GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER) | |
| Bial12g02880 | 279 | Pfam | Histone-like transcription factor (CBF-NF-Y) and archaeal histone | 10 | 73 | IPR003958 | - | |
| Bial12g02880 | 279 | Gene3D | Histone, subunit A | 1 | 88 | IPR009072 | GO:0046982(InterPro) | |
| Bial12g02880 | 279 | MobiDBLite | consensus disorder prediction | 151 | 165 | - | - | |
| Bial12g02880 | 279 | FunFam | dr1-associated corepressor homolog | 3 | 88 | - | - | |
| Bial12g02880 | 279 | SUPERFAMILY | Histone-fold | 4 | 90 | IPR009072 | GO:0046982(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bial12g02880 | K21752 | Dr1-associated corepressor |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 184984 | Bial12g02880 | Bial24g02719 | |
| 361689 | Bial10g02038 | Bial12g02880 | |
| 361709 | Bial10g02246 | Bial12g02880 | |
| 363737 | Bial12g02880 | Bial22g01577 | |
| 363738 | Bial12g02880 | Bial22g01844 | |
| 363739 | Bial12g02880 | Bial24g02719 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Bial | Bial-Chr12:58881658 | Bial21g02297 | Bial-Chr21:61095594 | dispersed | |
| Bial | Bial-Chr10:21837187 | Bial12g02880 | Bial-Chr12:58881658 | wgd | |
| Bial | Bial-Chr12:58881658 | Bial22g01577 | Bial-Chr22:16946372 | wgd | |
| Bial | Bial-Chr12:58881658 | Bial24g02719 | Bial-Chr24:57881084 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Bial14g00147 | BST,WGDA | 1 | 219 | CCAAT-HAP5 Transcription Factor family | AT1G08970 | 61.111 | 1.09e-80 | 251.0 | |
| Bial2g00411 | ACH,BST,WGDA | 1 | 219 | CCAAT-HAP5 Transcription Factor family | AT1G08970 | 61.111 | 9.04e-81 | 250.0 | |
| Bial2g01350 | ACH,BST,WGDA | 59 | 232 | CCAAT-HAP5 Transcription Factor family | AT5G63470 | 78.161 | 3.51e-92 | 270.0 | |
| Bial3g03506 | ACH,BST,WGDA | 16 | 215 | CCAAT-HAP5 Transcription Factor family | AT1G54830 | 66.822 | 6.30e-84 | 247.0 | |
| Bial3g02194 | WGDA | 69 | 146 | CCAAT-HAP5 Transcription Factor family | AT1G54830 | 67.089 | 3.54e-33 | 113.0 | |
| Bial12g02880 | BST,WGDA | 3 | 135 | CCAAT-HAP5 Transcription Factor family | AT3G12480 | 69.925 | 2.94e-62 | 196.0 | |
| Bial13g01927 | BST,WGDA | 69 | 146 | CCAAT-HAP5 Transcription Factor family | AT1G54830 | 65.823 | 1.60e-32 | 112.0 | |
| Bial1g03495 | BST,WGDA | 2 | 122 | CCAAT-HAP5 Transcription Factor family | AT5G43250 | 50.82 | 2.81e-35 | 117.0 | |
| Bial6g02572 | BST,WGDA | 1 | 278 | CCAAT-HAP5 Transcription Factor family | AT3G12480 | 43.986 | 6.33e-56 | 180.0 | |
| Bial1g01725 | BST,WGDA | 69 | 146 | CCAAT-HAP5 Transcription Factor family | AT1G54830 | 65.823 | 1.37e-32 | 112.0 | |
| Bial1g02681 | ACH,BST,WGDA | 1 | 219 | CCAAT-HAP5 Transcription Factor family | AT1G08970 | 62.449 | 4.32e-84 | 249.0 | |
| Bial24g02719 | BST,WGDA | 1 | 135 | CCAAT-HAP5 Transcription Factor family | AT3G12480 | 69.63 | 9.58e-63 | 198.0 | |
| Bial24g02950 | BST,WGDA | 73 | 199 | CCAAT-HAP5 Transcription Factor family | AT1G07980 | 32.812 | 1.31e-15 | 68.9 | |
| Bial9g02359 | BST | 1 | 130 | CCAAT-HAP5 Transcription Factor family | AT3G12480 | 74.615 | 3.73e-67 | 209.0 | |
| Bial10g02038 | BST,WGDA | 1 | 140 | CCAAT-HAP5 Transcription Factor family | AT3G12480 | 71.831 | 1.02e-66 | 208.0 | |
| Bial7g01074 | . | 1 | 219 | CCAAT-HAP5 Transcription Factor family | AT1G08970 | 54.0 | 5.14e-77 | 231.0 | |
| Bial14g01001 | BST,WGDA | 19 | 232 | CCAAT-HAP5 Transcription Factor family | AT5G63470 | 72.43 | 3.24e-93 | 271.0 | |
| Bial21g02297 | BST | 1 | 231 | CCAAT-HAP5 Transcription Factor family | AT3G12480 | 51.681 | 8.03e-69 | 214.0 | |
| Bial22g01577 | BST,WGDA | 12 | 140 | CCAAT-HAP5 Transcription Factor family | AT3G12480 | 66.412 | 3.98e-51 | 167.0 | |
| Bial13g03595 | BST,WGDA | 2 | 122 | CCAAT-HAP5 Transcription Factor family | AT5G43250 | 50.82 | 2.68e-35 | 117.0 | |
| Bial14g02319 | BST,WGDA | 29 | 278 | CCAAT-HAP5 Transcription Factor family | AT3G12480 | 38.023 | 7.75e-35 | 124.0 | |
| Bial12g03125 | BST,WGDA | 73 | 199 | CCAAT-HAP5 Transcription Factor family | AT1G07980 | 32.812 | 2.55e-15 | 68.2 | |
| Bial19g01024 | . | 1 | 219 | CCAAT-HAP5 Transcription Factor family | AT1G08970 | 55.823 | 1.06e-78 | 235.0 | |
| Bial13g02906 | ACH,BST,WGDA | 1 | 219 | CCAAT-HAP5 Transcription Factor family | AT1G08970 | 62.449 | 4.32e-84 | 249.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Bial | CBFD_NFYB_HMF | 1.1e-18 | CL0012 | TF | NF-YC |