AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial14g01327 ATGGCTGTCAAGGCGGCGATCCATGTCTCCGACGTATCTCATCTTGACCAGGTCAACGATGCCTCCGTCTCCTTGTCTCTCTACACCACTCGTCTTCCCACCGGATTGGAAGGTACCAATGGTCGAAAACCATTGCCTAAATTCATGGTGGTTGGTCACCGGGGCCATGGGATGAACATCTTACAGTCAACGGATAGGAGGATGAAAGCTTTTAAAGAGAATTCTATTCTTTCATTCAACAATGCTGCTAATCACCCACTTGATTACATTGAATTTGACGTTCAGGTGACGAAAGACGACGCACCCATTATCTTCCACGACAATTTCATCCTCTCAAAAGAGAATGGTAACATAGTTGAACGACGAGTGACCGATTTGAGTCTGGATGAATTCTTAAGCTATGGGCCTCAAAGAGAACCGGGCAAAATAGGGAAAACTTTGATGAGAGAATCCAATGGAAGTGTTGTCGAGTGGGAGGTGGAGATGGATGATCACTCTTGTACTCTGGAAGAAGCGTTCCAGAAAGTAAACACGCGTTTGGGATTCAACATTGAGTTGAAATTTGATGATTATGTTGTGTATGAACAAGAGTATCTCATTCATGTGCTTAAACTCATCTTGAAGGTGGTATATGAAAACGCCAAAGACAGGCCTGTGATTTTCTCCAGCTTCCAGCCCGACGCGGCCTTGCTTATGAAGAAACTTCAGAATAAATACCCGGTGTACTTCTTGACCAATGGCGGAAATGAGATATTTGATGACGTGCGTATGAACTCACTAGACGAAGCTAAGAATCTGGCCTTATCGGGTGGGTTGGACGGAGTTGTTTCTGAAGTTCATGGAATATTCAGAGATCCTTCGGTAGTCAGAGAAATTAAAGAATCAAATCTCTCCCTCCTTACTTATGGCAAATTAAATAATAGCCCGGAAGCCGTTCAAGTGCAATATCTTATGGGCGTAGAGGGTGTGATCGTCGATTTGGTACAAGAAGTTTCAAGTGCGGTTGCGTGTTTAAAGACGGGAGATGAAGCGGTACAAGAAGAGAACACGGAGAAGATGGAACAGTCGATTTTGCAGAATTTGATATCACAAGTGGTGCTGAATTGA 1107 43.9 MAVKAAIHVSDVSHLDQVNDASVSLSLYTTRLPTGLEGTNGRKPLPKFMVVGHRGHGMNILQSTDRRMKAFKENSILSFNNAANHPLDYIEFDVQVTKDDAPIIFHDNFILSKENGNIVERRVTDLSLDEFLSYGPQREPGKIGKTLMRESNGSVVEWEVEMDDHSCTLEEAFQKVNTRLGFNIELKFDDYVVYEQEYLIHVLKLILKVVYENAKDRPVIFSSFQPDAALLMKKLQNKYPVYFLTNGGNEIFDDVRMNSLDEAKNLALSGGLDGVVSEVHGIFRDPSVVREIKESNLSLLTYGKLNNSPEAVQVQYLMGVEGVIVDLVQEVSSAVACLKTGDEAVQEENTEKMEQSILQNLISQVVLN 368
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial14g01327 368 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 38 340 IPR051578 GO:0046475(PANTHER)
Bial14g01327 368 Pfam Glycerophosphoryl diester phosphodiesterase family 53 328 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Bial14g01327 368 ProSiteProfiles GP-PDE domain profile. 48 335 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Bial14g01327 368 FunFam Glycerophosphodiester phosphodiesterase GDPD2 40 337 - -
Bial14g01327 368 SUPERFAMILY PLC-like phosphodiesterases 46 329 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Bial14g01327 368 Gene3D Phosphatidylinositol (PI) phosphodiesterase 42 336 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial14g01327 K18696 glycerophosphodiester phosphodiesterase [EC:3.1.4.46]
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Event-related genes

Select Gene_1 Gene_2 Event_name
26099 Bial14g01327 Bial19g01754
26100 Bial14g01327 Bial7g01510
192358 Bial14g01327 Bial2g01698
367095 Bial14g01327 Bial2g01698
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr14:24262262 Bial22g00072 Bial-Chr22:569502 dispersed
Bial Bial-Chr9:5355784 Bial14g01327 Bial-Chr14:24262262 transposed
Bial Bial-Chr11:46194415 Bial14g01327 Bial-Chr14:24262262 wgd
Bial Bial-Chr14:24262262 Bial19g01754 Bial-Chr19:51901112 wgd
Bial Bial-Chr14:24262262 Bial2g01698 Bial-Chr2:27826969 wgd
Bial Bial-Chr14:24262262 Bial23g00801 Bial-Chr23:36722077 wgd
Bial Bial-Chr14:24262262 Bial7g01510 Bial-Chr7:48494012 wgd