AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial14g01358 ATGTTCAACAAGATACTTAACCGGCTTCCTAAAAAGCCACATAAATCGAATGATAATCGAGACGAAAAAAGCCCTAGTTCAGCTTCACACACATCGACTAGTTCGAGAACCAATAATGACGTGCCGATTACCCGATCTAGCACTTCAAATCCATCCGGTCAACCCTCAATTGGTCAAAGTCAAACCAACAAGAAAGTTCTCCAATCTCAAAACTCAAACTCAAATTTGAACGGGAATTCAACGATTCCCATCTCATACGAGGCCTTACCTAGCTTGAAAGACGTTTCAAGTTCCGAGAAGCAAAACCTGTTCATCCGAAAGTTGAATTTGTGTTGCGTTGTGTTTGACTTCACCGACCCCGCCAAGAACTTGAAAGAAAAAGATATCAAACGACAAACTTTAGTAGAACTCGTTGATTATGTCACTTCTGCGAACGGGAAATTTCCTGAAATCGTTATGCAAGAAATCGTTAAAATGGTGTCAGTTAATATCTTTCGTAAGCTCACTCCACAACCGCGCGGAAACAAAGTTCTAGAAACTTTTGACGGTGAAGAGGAAGAACCGTCAATGGACCCCGCGTGGCCTCACTTACAACTAGTCTATGAGTTCATTCTAAGATTTGTTGCATCCCCGGAAACCGACCCAAAACTTGCTAAGCGTTACATTGATCACGCGTTTGTTTTGAAGTGGTTGGATTTATTCGACTCAGAGGATCCACGCGAACGCGAGTATTTGAAATTTGTTCTTCATAGAATGTATGGAAAGTTTATGGTGCACCGTCCATTTATTCGAAAAGCAATCAACAATATTTTCTTTCGTTTTGTTTTTGAAACGGAAAAACATAACGGGATTGCTGAGTTGTTGGAGATATTGGGAAGTATTATTAACGGGTTCGCATTACCATTGAAAGAAGAACATAAGTTGTTTCTTGTGAGGGCTTTGATACCACTTCATAAGCCGAAATGCATACCGATGTATCACCAACAAATATCTTATTGTATCACACAATTTGTGGAAAAAGATTGTAAGCTTGCGGATACGGTTATTAGGGGTTTGTTGAAGTATTGGCCGATTACAAACAGTTCAAAAGAGGTTATGTTTTTAAGTGAGCTTGAAGAAGTTTTGGAAGCAACTCAGCTTCCTGAGTTTCAAAGATGTATGGTGCCTTTGTTTCATCAAATCGCGCGTTGTTTGAGCAGTTCACACTTTCAGGTGGCTGAGAGAGCATTATTCCTATGGAACAATGATCATATAGACAACTTAATAAAACAGAATCGAAAAGTGATCTTACCGATAATATTTCCAGCATTAGAAAGCAACACAAAGACACACTGGAACCAAGTGGTACTAAGTTTGACTTTGAATGTCAGAAAGATCTTTTCTGATGTTGACCCTCAACTGTTTGAAGAATGCTCTAGAAAGTTTAAAGAAGATGAGTCGAAGAAGGAAGAAATCAAGTTAAAACGGGAAGCCATATGGAAACGGCTCGAACAAGCAGCAGCTCAGGGTCATGAACAGGTCATGTCTCAGAAGCTAATTGCCAACCATGTTTCCGCATTTTGA 1563 39.8 MFNKILNRLPKKPHKSNDNRDEKSPSSASHTSTSSRTNNDVPITRSSTSNPSGQPSIGQSQTNKKVLQSQNSNSNLNGNSTIPISYEALPSLKDVSSSEKQNLFIRKLNLCCVVFDFTDPAKNLKEKDIKRQTLVELVDYVTSANGKFPEIVMQEIVKMVSVNIFRKLTPQPRGNKVLETFDGEEEEPSMDPAWPHLQLVYEFILRFVASPETDPKLAKRYIDHAFVLKWLDLFDSEDPREREYLKFVLHRMYGKFMVHRPFIRKAINNIFFRFVFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCIPMYHQQISYCITQFVEKDCKLADTVIRGLLKYWPITNSSKEVMFLSELEEVLEATQLPEFQRCMVPLFHQIARCLSSSHFQVAERALFLWNNDHIDNLIKQNRKVILPIIFPALESNTKTHWNQVVLSLTLNVRKIFSDVDPQLFEECSRKFKEDESKKEEIKLKREAIWKRLEQAAAQGHEQVMSQKLIANHVSAF 520
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial14g01358 520 Gene3D - 96 499 IPR011989 -
Bial14g01358 520 PANTHER SERINE-THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 505 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Bial14g01358 520 MobiDBLite consensus disorder prediction 1 79 - -
Bial14g01358 520 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 89 500 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Bial14g01358 520 MobiDBLite consensus disorder prediction 11 25 - -
Bial14g01358 520 PIRSF PP2A-B56 1 519 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Bial14g01358 520 FunFam Serine-threonine protein phosphatase 2A regulatory subunit 96 499 - -
Bial14g01358 520 SUPERFAMILY ARM repeat 101 482 IPR016024 -
Bial14g01358 520 MobiDBLite consensus disorder prediction 26 79 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial14g01358 K11584 serine/threonine-protein phosphatase 2A regulatory subunit B'
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr14:25386701 Bial22g00051 Bial-Chr22:414568 dispersed
Bial Bial-Chr14:25386701 Bial19g01715 Bial-Chr19:51555470 wgd
Bial Bial-Chr14:25386701 Bial2g01738 Bial-Chr2:29368657 wgd
Bial Bial-Chr14:25386701 Bial7g01542 Bial-Chr7:48816443 wgd