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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02425 ATGAGATCGGATATCGAATCAATTCAACGAGCAAACTCGCCGCGACTGATCGCAGTCGCAGAGGAAGGACTAAAGCGACTGCGATCAAAAGACGACGAAATTACAAACATCCGAAGGTTAAACTACGCATTATCCGAGAAAGTGAAGTCACTCACATTAGACAACCAAATCTGGCAGCAACAAGCTCAATCAAACGAAGCAACCGCAACCGTTCTCCGACAAAACCTCCAACAAATTCTAACACAAACCGTTGATGACGAGGAATCTTGTTGCGGGAGCAATAACAACGCTGAACAAGGGCGTATGTTAGCGAACGGAGGTAATGATGGAGCGCTGGCGTACGGTAGAAATGGTGGGGACAATAGTGGCAGGAGGTGGTGCAGAAATTGTGGGAAAGATGTTTTGACACTAGGAGTTAAGGGTGCTATCATGCATGTGGAGTTGTGGACGAGTCCCTGA 459 47.28 MRSDIESIQRANSPRLIAVAEEGLKRLRSKDDEITNIRRLNYALSEKVKSLTLDNQIWQQQAQSNEATATVLRQNLQQILTQTVDDEESCCGSNNNAEQGRMLANGGNDGALAYGRNGGDNSGRRWCRNCGKDVLTLGVKGAIMHVELWTSP 152
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02425 152 PIRSF SBP1-RNase-bind 1 140 - -
Bial16g02425 152 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 133 - GO:0004842(PANTHER)|GO:0043067(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02425 K19042 E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27]
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Event-related genes

Select Gene_1 Gene_2 Event_name
189173 Bial4g02989 Bial16g02425
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:63381226 Bial4g02990 Bial-Chr4:68684620 dispersed
Bial Bial-Chr16:63381226 Bial16g02426 Bial-Chr16:63405608 tandem
Bial Bial-Chr1:30860332 Bial16g02425 Bial-Chr16:63381226 wgd
Bial Bial-Chr13:35255796 Bial16g02425 Bial-Chr16:63381226 wgd
Bial Bial-Chr16:63381226 Bial4g02989 Bial-Chr4:68654291 wgd