AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02451 ATGGACGAACATTTCGCAGGTGATCCAACGGATAAACAAAGTGATTCTCCTTCATGGAAACTCGACATTAATCGCTTCCGCTTGCCACAATCCTCCTCTGGTAGTGATCATGCATCTTCCATTATTCGTCGCATGTTTCGACCCACTCCAAAAAAACAAGGAAACATTGACGAATATTATAAGAAACAAGAAATGCTCTTTGAAGGGTTCAATGAGATGGAGGCAATGGGCAAATCAGGTTTTTTACCTGCAAGTCTGACTGAGGATGAAATGAAGAATCTTGCTCGGAGTGAGCGATTGGCGATCCATGTGTCCAACGTAGCCAATTTGTTTCTGTTTGCTGCTAAAGTTTTTGCTTCTATCGAAAGTGGTTCGTTAGCAGTTATTGCATCGACTTTTGATTCGCTTTTGGACTTGTTGTCTGGATTTATTTTATGGTTTACTTCGAACGCCATGAAAAATCCTAACCAATATCACTATCCAATCGGGAAGAATCGTATGCAACCTGTTGTAAGCTCATCATACCTTTTATTAATAAAGAGTCCGCTAGAGAACTCATTTCAGAGGTTTGAAAACGAAATAGTGAGAGCATACGCTCAAGATCATTTCTTCGATGTCATCACCAATTCCGTTGGTCTAGGAGCAACGGTATTGGCTATACGTTACAAATGGTGGATTGATCCCGTTGGAGCGATAATTATAGCGTTATATACGATGAACACTTGGGCAAAGACGGTTATAGAGAACGTATGGTCGTTAATAGGGAGAACGGCCCCGCCAGAGTTCTTGGCAAAATTGACGTATTTGGTTTGGAACCATCACGAAGAAATAAAACACATTGATACAGTAAGAGCGTACACATTCGGTAGTTATTACTTCGTGGAGGTAGACATCGTGTTACCAAAGGATATGATGCTTAGCGAGGCTCATAATATCGGGGAAATGTTGCAGATAAAATTAGAACAATTGCCAGAAGTTGAACGAGCATTTGTTCATATTGATTTTGACTTTACTCACAAACCTGAACATAAGCAAAAGGTTTGA 1044 40.33 MDEHFAGDPTDKQSDSPSWKLDINRFRLPQSSSGSDHASSIIRRMFRPTPKKQGNIDEYYKKQEMLFEGFNEMEAMGKSGFLPASLTEDEMKNLARSERLAIHVSNVANLFLFAAKVFASIESGSLAVIASTFDSLLDLLSGFILWFTSNAMKNPNQYHYPIGKNRMQPVVSSSYLLLIKSPLENSFQRFENEIVRAYAQDHFFDVITNSVGLGATVLAIRYKWWIDPVGAIIIALYTMNTWAKTVIENVWSLIGRTAPPEFLAKLTYLVWNHHEEIKHIDTVRAYTFGSYYFVEVDIVLPKDMMLSEAHNIGEMLQIKLEQLPEVERAFVHIDFDFTHKPEHKQKV 347
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02451 347 FunFam Metal tolerance protein 4 261 347 - -
Bial16g02451 347 SUPERFAMILY Cation efflux protein transmembrane domain-like 97 255 IPR027469 -
Bial16g02451 347 Pfam Cation efflux family 103 174 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Bial16g02451 347 Pfam Cation efflux family 185 253 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Bial16g02451 347 Gene3D Cation efflux protein transmembrane domain 99 181 IPR027469 -
Bial16g02451 347 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 258 334 IPR036837 -
Bial16g02451 347 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 188 344 IPR050291 GO:0008324(PANTHER)|GO:0016020(PANTHER)
Bial16g02451 347 Pfam Dimerisation domain of Zinc Transporter 259 334 IPR027470 -
Bial16g02451 347 Gene3D Cation efflux protein, cytoplasmic domain 257 335 IPR036837 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02451 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
189189 Bial4g03024 Bial16g02451
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:63947331 Bial19g03410 Bial-Chr19:70073143 dispersed
Bial Bial-Chr1:30348256 Bial16g02451 Bial-Chr16:63947331 wgd
Bial Bial-Chr13:34723147 Bial16g02451 Bial-Chr16:63947331 wgd
Bial Bial-Chr16:63947331 Bial4g03024 Bial-Chr4:69259589 wgd