AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02454 ATGATGAATAGTAATCCTTCAACGCCGATGAATGCACACGCGCCGTCGTCTAGCTCCGGTGGCAACGGATCACCGGATTCAAATACTCCGAGAAGGAATTCGAAGCGGCCTAAATATTCTAGGTTTACGCAGCAAGAACTTCCAGCTTGCAAGCCAATTCTTACGCCAAAATGGGTGATTTCAGCATTCATGCTTGTGACAATCGTCTTCATACCTATAGGACTTACTTCCCTCCTTGCTTCTAATGATGTAATTGAAATTGTTGACCGGTACGATAATGCCTGCATAACAGGCACAAAAAGTCAAAAGGTCCAACATATACAAAATGCTACCACAGATAAAACCTGCACCAGAACGTTGACAGTCAAAAAGAGAATGAAGCAGCCAATTTATGTCTATTATCAGCTCGACAATTTCTATCAAAATCACCGCAGGTATGTCAAGAGCCGAAGTGATACGCAACTGAGAAACCGCGGTGATGAGAATGACACAAGTACATGTAAGCCTGAAAATGAAGCAAATGGAATGTCAATAGTGCCATGTGGACTTGTAGCCTGGAGTTTGTTCAATGACACATATGCTTTCTCTACCAGTGGCAACCGGTCATTAACCATAAACAAGCGGGAAATTTCATGGAAGAGTGACAGAGATGAAAAGTTTGGTAGTGATGTCTTCCCAAAAAATTTTCAAAACAGTAGCTTTATTGGTGGTGGAACTCTCAATTCGTCTATCCCATTAAATCAGCAAGAAGATCTTATTGTTTGGATGCGAACTGCTGCGCTTCCAACGTTTAGGAAACTTTATGGGAAAATTGAGCAGGATATTGAGGCTGGTGAAACAATAACTGTGGTATTGGAGAACCGTTACAACACTTACAGTTTCAGTGGCAAGAAGAAACTTGTGCTTTCAACTACCAGCTGGCTTGGTGGGAAAAATAACTTTATTGGCATTGCTTATCTGGCAGTTGGTGGCTTGTGCTTCTTACTAGCTACCACTTTCACTGTCATATATTTTGTTAAGCCAAGGCATCTTGGAGATCCGAATTATTTGTCATGGAACCGAAACCCAGGTGGTCACTAA 1080 41.85 MMNSNPSTPMNAHAPSSSSGGNGSPDSNTPRRNSKRPKYSRFTQQELPACKPILTPKWVISAFMLVTIVFIPIGLTSLLASNDVIEIVDRYDNACITGTKSQKVQHIQNATTDKTCTRTLTVKKRMKQPIYVYYQLDNFYQNHRRYVKSRSDTQLRNRGDENDTSTCKPENEANGMSIVPCGLVAWSLFNDTYAFSTSGNRSLTINKREISWKSDRDEKFGSDVFPKNFQNSSFIGGGTLNSSIPLNQQEDLIVWMRTAALPTFRKLYGKIEQDIEAGETITVVLENRYNTYSFSGKKKLVLSTTSWLGGKNNFIGIAYLAVGGLCFLLATTFTVIYFVKPRHLGDPNYLSWNRNPGGH 359
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02454 359 MobiDBLite consensus disorder prediction 1 42 - -
Bial16g02454 359 MobiDBLite consensus disorder prediction 150 171 - -
Bial16g02454 359 MobiDBLite consensus disorder prediction 150 167 - -
Bial16g02454 359 PANTHER CELL CYCLE CONTROL PROTEIN 50 30 351 IPR005045 GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro)
Bial16g02454 359 MobiDBLite consensus disorder prediction 1 30 - -
Bial16g02454 359 Pfam LEM3 (ligand-effect modulator 3) family - CDC50 family 78 342 IPR005045 GO:0016020(InterPro)
Bial16g02454 359 PIRSF Lem3-Cdc50 8 355 IPR005045 GO:0016020(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02454 K26935 cell cycle control protein 50
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
189191 Bial4g03027 Bial16g02454
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:63965535 Bial18g02891 Bial-Chr18:76316192 dispersed
Bial Bial-Chr22:17023033 Bial16g02454 Bial-Chr16:63965535 transposed
Bial Bial-Chr1:30332534 Bial16g02454 Bial-Chr16:63965535 wgd
Bial Bial-Chr13:34681606 Bial16g02454 Bial-Chr16:63965535 wgd
Bial Bial-Chr16:63965535 Bial4g03027 Bial-Chr4:69275607 wgd