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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02464 ATGGCCGGCGGAGGTGGGAAGGCGGTGGTGGTGCATCCGGCGGTTGAACCGCTGTCGTATTTGATCGGAACATGGAGAGGTGAAGGCGAAGGTGGTTTCCCAACCATATCCTCCTTCGCGTACGGTGAAGAGCTCAATTTCACTCATCCTGGTAACAAGAAGCCTGTAATATCTTACTCTCAGAAGACTTGGAAGTTGAAATCTGGGGAGCCTATGCATGCCGAGAGCGGTTACTGGAGGCCGAAACCTGACGGAACTATTGAGGTTGTCATTGCACAGAGCACTGGTCTTGTTGAGATTCAGAAAGGAACATATGATGCAGAAAACAAAGTGATTAAGCTTCAAAGTGAGCTTGTCGGAAATGCCTCAAAGGTTAAAGGGATAACCCGAGTTTTTACTTTGGTTAATGAAGAATTATCTTATGTGGTTGAGATGGCTACTAATATCACCGGTCTTCAACCGCATCTGAAAGCTTCTCTTAAGAAGCTCTAA 492 46.54 MAGGGGKAVVVHPAVEPLSYLIGTWRGEGEGGFPTISSFAYGEELNFTHPGNKKPVISYSQKTWKLKSGEPMHAESGYWRPKPDGTIEVVIAQSTGLVEIQKGTYDAENKVIKLQSELVGNASKVKGITRVFTLVNEELSYVVEMATNITGLQPHLKASLKKL 163
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02464 163 CDD lipocalin-heme-bd-THAP4-like 15 162 IPR014878 -
Bial16g02464 163 Pfam THAP4-like, heme-binding beta-barrel domain 15 162 IPR014878 -
Bial16g02464 163 SUPERFAMILY Lipocalins 11 162 IPR012674 -
Bial16g02464 163 Gene3D - 10 163 IPR012674 -
Bial16g02464 163 PANTHER THAP4 PROTEIN 9 163 IPR045165 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02464 K23205 THAP domain-containing protein 4
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Event-related genes

Select Gene_1 Gene_2 Event_name
189192 Bial4g03035 Bial16g02464
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:64111951 Bial4g03035 Bial-Chr4:69473653 wgd