AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02519 ATGCCAAGAACTGGGAATGATATGGAGTCTGGGAGTATTCCTCAGTCTTTGCAGAGCTTATTCTATAACCTTCAGTACAGTGATACTAGTGTCGCCACCGAAGAGCTGACCAAGTCTTTCGGTCTGGATACACATGAATACTTTAAGAAGAATGATGCTCAAGAATGCATCATGGTTCTCTTTGAGAAACTTCAAGAAAAAATGAAGATAAGCGACGATTATAGATTCCCCTTGCAATTTGATCTTGATATAGTGGATGGAAAGTATTTATCACCTCTGGCAGACAGAAGCGTTCGCAATCTTTACACTCTTCACAGTGTTTTGGCTCATAGTGGGGATGTACATGATGGACAAGCTGTAACCGGCGTTGTTCAGGCAACTTTTGACGTTGGTTACTTGCTCGCAGTTAAAATTGGTAACTCAAGCATCCCATTAACGGGTGCGGTTTTCAAACCGGGGCACACTGTCCCAATAACACCTGAAAATGAGGTGGCGCCGCATGTTGAAATGATCAACCGAAACGTAAGCGTAAACAAATATCAAAAGAACTTATCAAACAATATACCAAACAGTATATCCAGAAACCAACCAGCACCTCATTTGCGGGCCTCATTAAGCAAGCAGGTGCACTCGGTTCGGCCATTGAAAGTTTACCAGCCAAACGGGTCAATAAGTCAACCGTCTTATTTTCCAACTAGCTCACCGTTTGGTGATATGAATGAGCCAGTTTTGGTTGAACCTTTGCAAAACCGACACCTGGTTCAACATTTCCAACCGCCACCAGTGTTTGGAGGCGTCCTACATGGTGGGACTGGAAGAATGACAGATCTTTTGAATGTATGA 843 43.3 MPRTGNDMESGSIPQSLQSLFYNLQYSDTSVATEELTKSFGLDTHEYFKKNDAQECIMVLFEKLQEKMKISDDYRFPLQFDLDIVDGKYLSPLADRSVRNLYTLHSVLAHSGDVHDGQAVTGVVQATFDVGYLLAVKIGNSSIPLTGAVFKPGHTVPITPENEVAPHVEMINRNVSVNKYQKNLSNNIPNSISRNQPAPHLRASLSKQVHSVRPLKVYQPNGSISQPSYFPTSSPFGDMNEPVLVEPLQNRHLVQHFQPPPVFGGVLHGGTGRMTDLLNV 280
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02519 280 PANTHER AT HOOK MOTIF-CONTAINING PROTEIN 117 213 IPR045881 -
Bial16g02519 280 Gene3D Cysteine proteinases 1 79 - -
Bial16g02519 280 SUPERFAMILY Cysteine proteinases 7 118 IPR038765 -
Bial16g02519 280 Pfam Ubiquitin carboxyl-terminal hydrolase 11 69 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02519 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
189221 Bial4g03120 Bial16g02519
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
689825 Bial Bial16g02519 Bial-Chr16:65518664 Bial4g03115 Bial-Chr4:71364056
734735 Bial Bial16g02517 Bial-Chr16:65340714 Bial16g02519 Bial-Chr16:65518664
740524 Bial Bial16g02519 Bial-Chr16:65518664 Bial16g02520 Bial-Chr16:65563841