AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02638 ATGTCTATTTCCGATCAAAACCGTTCAACTTCCGACGGAAAACAGCGGCGGTTGTTTCCGTTTTGGCAAACTGGAACCGGTTCTTCGTCGCCGGCGTCAACGCAGAGTCAACTGACGGCGAATAGTAATGAAAACGGCGTCGTATTGAACGGCCGGACGACGAATAAGCTGTCGTCGGTGGCGAAATCGCTTATTCCGGCGAGACGACGGCTCCGGCTTGATCCGGCGAATAATCTATACTTTCCGTATGAGCCTGGTAAACAGGTGAGGAGTGCTGTTCGGATTAAGAACCGTAGCAATTCTCATGTTGCTTTCAAGTTTCAAACGACTGCGCCTAAGAGCTGTTATATGCGACCTCCTGGTGGTGTTTTGGCTCCTGGCGAAAGCCTCATTGCTACAGTTTTCAAGTTTGTTGAGCTACCAGATAAGAACGAAAAACAGTCGGATCAAAGAAGCAAGGTGAAGTTTAAGATCATGAGCCTCAAGGTGAAAGAAGGAACAGACTTTGTGCCTGAACTGTTTGATGAGCAAAAGGATGAAGTAGTTGTTGAGAGGATTTTAAAAGTTACTTTCTTAAATGCGGATCGTTCTACCCCGGCATTGGAAAAACTTAAACATCAACTTGCTGAAGCAGAAGCTGAATTAGAAATAAGGAAAAAGCCTCCTGTGGATACTGGCCCAAAAGTAGTGGGGCAAGGACTTGTTATTGATGAGTGGAAAGAACGAAGGGAGAAATACCTGGCTAGACAACAGGTGGAGGCTACAATGGAAATAGTGGAGAAGAAGAATAACAAGATACAATTGTTGCTTCATACTGGAGGCCTATGGAAGGATAAGTGTACAATGCATTTGAGGTATGAGGGAAACAAGGTAAGAACATATCCGCTAGAGATCCCTTCGGACTTAAACTCGTTTTCGGTGTTGATGGATATTGTGATGAGGGCAGCAGGCTTAGGTGATGATGATTATGTTGGAAAACTAACTTACAGATCAGGACGTATTTGCTTGGCTTTTGGGGCAAGGCCAGGGGATCCACCGGCCGAAACAGGCTATGCACCGATACTTCTCGCCCGAGACATTCACGTTGTCAACTACATGATGAGTATGAAAAGCCGACCCGATCTTAGTCATGACTTATATCTCGAGAAACTTTATTAG 1158 45.34 MSISDQNRSTSDGKQRRLFPFWQTGTGSSSPASTQSQLTANSNENGVVLNGRTTNKLSSVAKSLIPARRRLRLDPANNLYFPYEPGKQVRSAVRIKNRSNSHVAFKFQTTAPKSCYMRPPGGVLAPGESLIATVFKFVELPDKNEKQSDQRSKVKFKIMSLKVKEGTDFVPELFDEQKDEVVVERILKVTFLNADRSTPALEKLKHQLAEAEAELEIRKKPPVDTGPKVVGQGLVIDEWKERREKYLARQQVEATMEIVEKKNNKIQLLLHTGGLWKDKCTMHLRYEGNKVRTYPLEIPSDLNSFSVLMDIVMRAAGLGDDDYVGKLTYRSGRICLAFGARPGDPPAETGYAPILLARDIHVVNYMMSMKSRPDLSHDLYLEKLY 385
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02638 385 SUPERFAMILY PapD-like 59 199 IPR008962 -
Bial16g02638 385 MobiDBLite consensus disorder prediction 1 47 - -
Bial16g02638 385 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 70 312 IPR016763 GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Bial16g02638 385 Gene3D Immunoglobulins 66 194 IPR013783 -
Bial16g02638 385 Pfam MSP (Major sperm protein) domain 71 178 IPR000535 -
Bial16g02638 385 ProSiteProfiles Major sperm protein (MSP) domain profile. 70 192 IPR000535 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02638 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
189283 Bial4g03240 Bial16g02638
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:954742 Bial16g02638 Bial-Chr16:68328028 dispersed
Bial Bial-Chr16:68328028 Bial9g01915 Bial-Chr9:51830938 dispersed
Bial Bial-Chr16:68328028 Bial4g03240 Bial-Chr4:74211895 wgd
Bial Bial-Chr16:68328028 Bial4g00109 Bial-Chr4:1064215 wgd