AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02662 ATGGCAAACTTGTTAGCTCAGTTACAGTCCATCAAGATTTCATGTGATGGCCTCACCATTGCCGTGAAAGATGTGAGTGATTTGTGGCCTCTTGTCAAGGACAAATTCGACGAACGCCTTCCGTTCCAACGAGCCACATTACACAACAAAAACCGGTATCCGGTCACTGTTGAAAACCTACAAGCTGAGTTTTTGTTAACTACTGACTCAAGGATCAAGAGCCGGGTCCCGCAGGATCAACTGTACTTTTGTTTTCAAGAACCATATGCAACTGTGGTTCTTGTAGCATGTGAGGATCTAGACGAGTTCAAGACGGTACTAAAACCACGTCTGAAGTTAATTTTGCAAAATGAAGAGGAGTGGTTCATTGTGTTTGTGTCCAAAGCTAAATCGGACAAGGACCCCGTGAGCAAGATGGAAAAGAAGGTTTATGCCAGACTTGAAGTTGATTTCAATTCAAGAAGGAGAGATAGGTGCTGCAAGTTTGACTTATTTGACAGTGAAGAACCCTTTTGGGAAGATTTTGAACTCAAAACCATGGAGTGCATCCGAAACACTCTCGATAGGCGTGTCCAGTTCTACGAGGACGAGATTCGTAAGCACAATGAACAACGGTTATCGCCCACTTGGAGCTTTTGTGACTTTTTCATCCTCAAAGAATGCCTGGCATTCATGTTAGAGATGGCTAATCTTCCTGAGGATTCGTTGCGCGAATATGATCACATAGAGTTCTTTTACTTGGATACAGTTAAAAATGTAGACAAAAATAGAGATTTTGGAGGAAAGGAGCATGGAGACGATCAATCCGCGATACTAAGCCGTAACAACAAACAACTAACACAGATAGTTCAAGAAACTTCCTTTAGAGAGTTTGAGTTCCATCAATATCTATTCGCCTGTCAAGCTAAGTTATTGTTTGATCTACACCGTCCGTTTGATGTTGCATCAAGAGGGTTCTCATTTATAGTCAGTTTCTCAGAAACTTTGGCCCGGCACGAGAGTAATTTGCCTTTCTGCTTGAGGGAAGTTTGGGTCCTAACTTCATGTTTGAGCTTGATCAACGCGACCGCTGACCATTATAGAGACGGACAAATAGCACCGGATGTAGAAAGAGAATATTATCGCATACGGGCTGAGTTATATACTTTATCCCGAATAAAGATCATGCGGCTTGCATACCTTATCGGGTTCGGATCAGATATAGAAAGAAGTCCACTTAACAGTGCTTCACTTAGCATGTTGCCATGGCCTATGCCTGCAGAATGGCCTTCACTTCCCTCTGATGCTTCATCTGAGGTTCTTGAAAAAGAAAAGTTAATTCTTCAAGTTACTCCAAGAGCCAAGCACTTTGGTATTCAAAGTAAACAGTTGTCTCTTGAACCGTGTCCTCTTTTGAAAACCGAGAGCTCGGTTGATACCAAGAAACTTGCGGAAATTTTTGTGGCTGCTGAACACGCTCTTCGTGCGACTATTACCGATCCTGATTTATGGAAATGTTTATCATCTTTAGAGGAGTTCGAGAAAAAATACCTGGACTTATCAAAGGGGGCTGCTGATAACTTTTACCATGCATGGTGGAAAAGACATGGAGTCGTTTTCGACGGTGAAATCGCGTCCGTTTACTTCAAACACAAGAACTATGAACAGGCTGCAAGTTCATACGAAAAAGTGTGTGCTCTGTATGCTGGTGACGGGTGGCAAGATTTGTTAGCAGACGTGCTTCCAAATCTAGCCGAATGCCAGAAAATATTAAATGATAAGCCTGGTTACTTATCTTCATGTGTGAGATTACTTTCTTTAGATAAAAACTTGTTCTCGGTCAAAGAACGCCAAGTGTTCCAGTCAGAGTTAGTTAGTCTTACACAAACTGAAATGGTTGACCCGAACCCGTTAGATGTGTCATCATTGATAACATATTCGGCTGACACCGGCCCACCAATGGAGCTGTGTGATGGGGATCCGGGAACTTTGACTTTGACTTTATGCAGTGAGTTTCCTGATGATATTACTCTTGAATCACTTAGTCTTACATTGACATCGACACATAATGCGGATGAACGTGTTAAGGCGATTAAGAGCAGTGGTGTGACAGTATTGAATACGGGTCGGAATACGATTGCCCTTACGTTGCCTGCGCAGAAACCGGGATCGTATGTGTTGGGTGTTCTTACAGGACAGATTGGTCATATAAGATTCAGGTCTCATGGTTTCTCGAAAGGTGGGCCCGCGCATAGTGGTGATATCGGTTTTGATAAGCCCGTTAAGCCTATATTGACGGTATTAATCCTGCTTTTATGGGTCAAAATGGTGTTCAAACCAAGATCCCTTGTGGACCTATATCCCGCAGTCTCGTCCGCATTATTAATAAACAAGCCTCAATGGGTCGGGATCGTTATCAAGCCATTAAACTACTCCCTCAAGGGAGCCCGTTTACACATTGACGTGGGGCCGTCATTAAAGATCGAGGAATCACGCGCCATTGAAATCGAGAAACGTGTCGATAACGATAATAACATTTGTCAACTTAATCTTACAAATGGATGTATAGAGTTACCAGACTGGGCCAGCAATATAACTACCATTTTATGGATTCCAGTTTGTGCCATTAGTGATGGACTGCCAAAAGGAAAATCAGCAGGTGTATTTTCAACCCAAAGACCAAACATTGCTAATGGGCTGAGGACTTTAGCTCTAAAACTTGAATTTGGAGTGTCACATAATCAAATATTGAAAAGGACTATACCAGTTCTTTTCAACGACCCGTTCCACGTCAGCACACAAGTCACCGACCAAGGCAGTGACGGGTCTTTGTTTTTGCAGGTGATATTACAGTCACAAGTGAAGGCTACATTAACTATACATGATGTTTCATTGGATTTACAAGACGGTTTTTCTCACGCTGGACGAGGTGATGGGAGACCGACATCTGGCATGTTCCCGTTGGTCGTTCCTCCGACATCTAAATCCGGAATATTGTTTGGTATATCACTTGAAGCTACAACTAATGAAGGCAATGAAGATGACGAGGTAGTGGTGCATCGTGATACAATAATAAATATAAAATATGAAATTAGCGGGGATAGATATCATGGATCTCACACCCCTCTATCTCTAAAACCCGAAGGACCCGAAAAGGATGACACGATTTTAACATTCAAAAGTGGTCTCACTTTACAACGGCCCGTGCAAGAGCCGTTATTAGCAGTCGCTTTTCTTCCTTTACCTTCGAACGGTCTTACAGTTGGTCAACTTGTCACATTCAAATGGAGAGTTGAAAGGTTGACCAGTTTTGACTTAAAGGACGAGTTATTATATGAAGTCAATGCGAACTCCAAGAATTGGATGTTTGCCGGAAGGAAGCGAGGCCATGCCCCTCTCTCCTCAAAACAAGGTGCAAGAATTGAGATATCAATAATGTGTGTGCCATTAGCTGCTGGGCATGTAAGACCACCACAACTCCACTTGCCAAATGTCAACCGGGCCCACATATGTTGCAACCCGGCGGGCCCACATTTAGTGTGTGTCTTGCCTCCACCTTTGAGCTCATCATTTTGCATTCCACATTGA 3567 42.95 MANLLAQLQSIKISCDGLTIAVKDVSDLWPLVKDKFDERLPFQRATLHNKNRYPVTVENLQAEFLLTTDSRIKSRVPQDQLYFCFQEPYATVVLVACEDLDEFKTVLKPRLKLILQNEEEWFIVFVSKAKSDKDPVSKMEKKVYARLEVDFNSRRRDRCCKFDLFDSEEPFWEDFELKTMECIRNTLDRRVQFYEDEIRKHNEQRLSPTWSFCDFFILKECLAFMLEMANLPEDSLREYDHIEFFYLDTVKNVDKNRDFGGKEHGDDQSAILSRNNKQLTQIVQETSFREFEFHQYLFACQAKLLFDLHRPFDVASRGFSFIVSFSETLARHESNLPFCLREVWVLTSCLSLINATADHYRDGQIAPDVEREYYRIRAELYTLSRIKIMRLAYLIGFGSDIERSPLNSASLSMLPWPMPAEWPSLPSDASSEVLEKEKLILQVTPRAKHFGIQSKQLSLEPCPLLKTESSVDTKKLAEIFVAAEHALRATITDPDLWKCLSSLEEFEKKYLDLSKGAADNFYHAWWKRHGVVFDGEIASVYFKHKNYEQAASSYEKVCALYAGDGWQDLLADVLPNLAECQKILNDKPGYLSSCVRLLSLDKNLFSVKERQVFQSELVSLTQTEMVDPNPLDVSSLITYSADTGPPMELCDGDPGTLTLTLCSEFPDDITLESLSLTLTSTHNADERVKAIKSSGVTVLNTGRNTIALTLPAQKPGSYVLGVLTGQIGHIRFRSHGFSKGGPAHSGDIGFDKPVKPILTVLILLLWVKMVFKPRSLVDLYPAVSSALLINKPQWVGIVIKPLNYSLKGARLHIDVGPSLKIEESRAIEIEKRVDNDNNICQLNLTNGCIELPDWASNITTILWIPVCAISDGLPKGKSAGVFSTQRPNIANGLRTLALKLEFGVSHNQILKRTIPVLFNDPFHVSTQVTDQGSDGSLFLQVILQSQVKATLTIHDVSLDLQDGFSHAGRGDGRPTSGMFPLVVPPTSKSGILFGISLEATTNEGNEDDEVVVHRDTIINIKYEISGDRYHGSHTPLSLKPEGPEKDDTILTFKSGLTLQRPVQEPLLAVAFLPLPSNGLTVGQLVTFKWRVERLTSFDLKDELLYEVNANSKNWMFAGRKRGHAPLSSKQGARIEISIMCVPLAAGHVRPPQLHLPNVNRAHICCNPAGPHLVCVLPPPLSSSFCIPH 1188
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02662 1188 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1-TMEM1 9 1187 IPR045126 GO:0006891(PANTHER)|GO:0034498(PANTHER)|GO:0048193(InterPro)|GO:1990071(InterPro)|GO:1990071(PANTHER)
Bial16g02662 1188 Pfam Trafficking protein particle complex subunit 10, TRAPPC10 1088 1156 IPR022233 -
Bial16g02662 1188 SUPERFAMILY TPR-like 537 615 IPR011990 GO:0005515(InterPro)
Bial16g02662 1188 Coils Coil 184 204 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02662 K20307 trafficking protein particle complex subunit 10
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Event-related genes

Select Gene_1 Gene_2 Event_name
189297 Bial4g03262 Bial16g02662
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr15:53755333 Bial16g02662 Bial-Chr16:68955920 transposed
Bial Bial-Chr15:53758729 Bial16g02662 Bial-Chr16:68955920 transposed
Bial Bial-Chr15:60143313 Bial16g02662 Bial-Chr16:68955920 transposed
Bial Bial-Chr16:68955920 Bial4g03262 Bial-Chr4:74785566 wgd