AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02686 ATGACAACTCGTATCCTCCTTCGCACTCTCCTCTCCTCCGTACACCAAACCCTAACCCCAACCCGTTCCTTCACCACCACCACCTCCCACTTCCTCCGCCTCCGTCCCATCGCCGTCGCCGCCGCCGCCAATCTCCGCCTGCACTCCCTCACCGCCGCCAACAACGCCCGTACGTTCTCCACACGGCCGACGACCTCCTCGTTAAACGATTCGAACCCTAACTGGTCCAATAGGCCCCCCAAGGAGACGATTCTGTTAGACGGGTGTGATTTTGAGCATTGGCTTGTGGTCGTTGAGAAACCCGAAGGCGAGCCGACGAGAGATGAGATTATTGAGTCGTATATTAATACTCTTGCTAAAGTTGTTGGCAGTTATGATGAAGCAAGGATGAAAATCTACTCGGTTTCAACTAGATGTTATTTTGCTTTTGGTGCTCTAGTGTCTGAAGAACTGTCTTATAAGCTTAAAGAATTACCTGGCGTTCGTTGGGTGCTACCTGATTCTTACCTTGATGTTAAGAACAAGGATTATGGAGGTGAACCATTTATTGATGGAAAGGCGGTACCTTATGATCCCAAGTACCATGAAGAGTGGATTAGAAACAATGCCCGGGCCAATGAGAGAAACAGGAGGAACGACAGGCCTCGCAACTTTGACCGGTCAAGAAATTTTGAGAGAAGAAGAGAGAACATGCAAAACAACCGTGGACCGCCTGGTCCTCCACCCAACAACATGAGCGGCCCACCACCGCCCAACAACATGAGCGGCCCACCACCGCCCAACAACATGAGCGGCCCACCACCGCCCAACAACTGGAATGGCCCACCACCGCCCAATAACATGAGCGGGCCACCACCACCCAATAACTGGAATGGGCCACCACCACAAAATAACTGGAACGGGCCACCACAGCCCAATAACTGGAACGGGCCACCACCGCCCAACAACATGAGAGGTCCACCACCGCCCAATAACTACCAGCAGCAGGGCCGGTATGGGCCGGGACCAGTTGCGGGACAGGCCCAGGATGTAGGTGGAAGAGACATGCCCCCTCAAGCACACTATGAATGA 1071 53.41 MTTRILLRTLLSSVHQTLTPTRSFTTTTSHFLRLRPIAVAAAANLRLHSLTAANNARTFSTRPTTSSLNDSNPNWSNRPPKETILLDGCDFEHWLVVVEKPEGEPTRDEIIESYINTLAKVVGSYDEARMKIYSVSTRCYFAFGALVSEELSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNFDRSRNFERRRENMQNNRGPPGPPPNNMSGPPPPNNMSGPPPPNNMSGPPPPNNWNGPPPPNNMSGPPPPNNWNGPPPQNNWNGPPQPNNWNGPPPPNNMRGPPPPNNYQQQGRYGPGPVAGQAQDVGGRDMPPQAHYE 356
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02686 356 MobiDBLite consensus disorder prediction 58 79 - -
Bial16g02686 356 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 7 232 IPR039206 GO:0005739(PANTHER)|GO:0016554(InterPro)|GO:0080156(PANTHER)
Bial16g02686 356 MobiDBLite consensus disorder prediction 206 232 - -
Bial16g02686 356 MobiDBLite consensus disorder prediction 235 321 - -
Bial16g02686 356 MobiDBLite consensus disorder prediction 206 356 - -
Bial16g02686 356 Pfam Multiple organellar RNA editing factor 1, MORF domain 91 182 IPR054059 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02686 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
28242 Bial16g02686 Bial3g03208
189308 Bial4g03317 Bial16g02686
363333 Bial12g02341 Bial16g02686
368935 Bial16g02686 Bial24g02201
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:69497746 Bial1g01863 Bial-Chr1:24322754 dispersed
Bial Bial-Chr12:53707571 Bial16g02686 Bial-Chr16:69497746 wgd
Bial Bial-Chr16:69497746 Bial24g02201 Bial-Chr24:52579467 wgd
Bial Bial-Chr16:69497746 Bial3g03208 Bial-Chr3:76641543 wgd
Bial Bial-Chr16:69497746 Bial4g03317 Bial-Chr4:75825562 wgd