AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02716 ATGAATAATAATAATAAGAAGAGTAGAGGAGGAGTGTTGTATCGGATATGGAATGCGATGTTTGGATTACGCGGGGATGATTTCGAGAAGAGGCTGCAGTATATAAGTAAAGAGGAAGGTGTTATTATTAATCGGATGAACAGGAGGTCCTTGAGGTGGAGGAGAAATAAGAGGAGTTTCATCGTGTTTTCGGTTATTATCGAGTTGGTTGCAATTGGTTATGCTATCATGACGACAAGAACAGTGGATATGGATTGGAGGACGAGATCGTTACGTGTCTTACCTATGTTTTTGATACCTGCTTTGTCATTCGGTTTGTATTATGGGCTTTCAAGTTTCACTAAGTTTTGCGATCGAAGGGATCAGAAAACATTAGATAAGCTTCGTGATGAAAGACAAGCAAAAATTGATGAACTTAAAGAAAGAACTAATTATTACATCACTCAGCAACTCATTCAGAAATACGACTCGGATCCAGCTGCAAAAGCAGCTGCAGCAACCGTTCTTGCGTCAAAACTGGGTGCAGATTCGGGTCTGAAAGTGTTTCTTGCAAATGAATCACAACATGTTGCAGGCAAAGGCAGTGATGTTGACTTACAAAGTCAACAAGCTAGTGGTCTCAGGAAACGAAACCAACCTCCTGGAAGCAAAGAAACGCCTCAATTTGATGGAAATGAGGTTCCCGGAAACTTGCCACGTGGACAAGTTGTTGAGCATCATAATCCCGCGGCTTCGGGTGGTCAAGATGGCGGTTGGATAGCTAGAATTGCTGCATTGATTGTAGGAGAGGACCCCACACAATCGTACGCTCTTATATGCGGAAATTGTCTTGCAAGAAAGGAAGAATTCCCATTTATCACTTACTATTGTCCCCATTGTCACATGCTAAATAAACCAAAGAATTCAGATAAAACGTCCCCTGCTTCGGGGTCTATAGAAACAGCAAGTGCAAATGTTAAGTTGACTGAAGAAAACGAGTCAACGGGTGAGAAAGTAGCCGTTGCTAGCAGCCCCGTGGTAGCTGAAGTGGAAGAGAAAGAAGCAAATGAGAAAACAGTGGCTGCATAG 1068 42.42 MNNNNKKSRGGVLYRIWNAMFGLRGDDFEKRLQYISKEEGVIINRMNRRSLRWRRNKRSFIVFSVIIELVAIGYAIMTTRTVDMDWRTRSLRVLPMFLIPALSFGLYYGLSSFTKFCDRRDQKTLDKLRDERQAKIDELKERTNYYITQQLIQKYDSDPAAKAAAATVLASKLGADSGLKVFLANESQHVAGKGSDVDLQSQQASGLRKRNQPPGSKETPQFDGNEVPGNLPRGQVVEHHNPAASGGQDGGWIARIAALIVGEDPTQSYALICGNCLARKEEFPFITYYCPHCHMLNKPKNSDKTSPASGSIETASANVKLTEENESTGEKVAVASSPVVAEVEEKEANEKTVAA 355
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02716 355 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 252 297 IPR019273 -
Bial16g02716 355 MobiDBLite consensus disorder prediction 300 355 - -
Bial16g02716 355 MobiDBLite consensus disorder prediction 300 323 - -
Bial16g02716 355 MobiDBLite consensus disorder prediction 194 219 - -
Bial16g02716 355 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 1 319 IPR040115 GO:0071782(PANTHER)|GO:0071786(PANTHER)|GO:0071786(InterPro)
Bial16g02716 355 Coils Coil 122 142 - -
Bial16g02716 355 MobiDBLite consensus disorder prediction 193 234 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02716 K23292 endoplasmic reticulum junction formation protein lunapark
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Event-related genes

Select Gene_1 Gene_2 Event_name
28245 Bial16g02716 Bial3g01746
28246 Bial16g02716 Bial3g03205
189312 Bial4g03335 Bial16g02716
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:69970293 Bial4g03335 Bial-Chr4:76089711 dispersed
Bial Bial-Chr16:69966127 Bial16g02716 Bial-Chr16:69970293 tandem