AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02728 ATGGGCACGGTTCGGTCCGAATCCCTCATGCGTTGGGTTTGGGAAGCTAACCGTGGGAACCCGGTTCGTGAAAATGCCACCTTAACATTCGGTACAGACGGAAACCTGGTCCTGGCGGATGCTGACGGACGTGTTGTCTGGCAAACGAATACCGCCAACAAGGGCGTGGTCGGTTTTCAAGTGCTTCCAACAGGTAACATGGTTCTTCATGACGGTAAGGGTAATTACTTATGGCAAAGCTTTGATTCCCCAACTGATACTTTCTTGGTTGGTCAAACACTTCGAGCTGGTGGTCCGAATAAGCTCGTGAGTCGGCTTTCGGAGGCGAGTAATGGGGATGGACCGTATAGTTTGGTCATGGAGCCAAAAGGGTTATCCTTGTATTACAAAAGTCCTAACTCGCCTCGACCAATGCTTTATTGGACGTCTAGCGAGTGGTTCACCGTTGACCAAGGTAGTTTGGTCAACTTAACTCTTACGTCAGTGCCAGACACTGACGAGGGTTTTCTATATTACCTAACGTTTGATTATTTCACCACAAAGTCATCTTCTAACCGTAACATGGCGTTTACACGTTACAACAACACATTATCTTATCTTCGGTTAGGGATAGATGGAAACCTTAGGTTCTACACGTATAACCCTAATGTGCAAGGTGTGGCGTGGGAGTTGGTGTACACGTTTCTTGATAGGGATTCGATGGAAGGCGAGTGTCAATTACCAGGACGATGTGGGAACTTTGGGTTATGTGAGGATAGTCAGTGTGTGGCGTGCCCGACACCAAATGGGTTAAGTGGCTGGAGCAAAGATTGTGATGTGAAAAAGGTGACGTCTTGCAAAGAGAGTGAGTTTGGGTACTACAAGCTTCAAGGGGTTGATCATTTTATGATCAAGTACACGAGGGGAGATGGTGCGACGAAACAAAGCGATTGTGAGAGCAAATGCACGAAGGATTGCAAGTGCATGGGGTACTTCTATCACACGGAGGGTTCGAGGTGTTGGATTGCTTATGATTTGAAAACATTAACAAGAGTTGGGAACTCGACTCATTTGGCGTACATCAAAACACCCAACAAGTAG 1080 46.85 MGTVRSESLMRWVWEANRGNPVRENATLTFGTDGNLVLADADGRVVWQTNTANKGVVGFQVLPTGNMVLHDGKGNYLWQSFDSPTDTFLVGQTLRAGGPNKLVSRLSEASNGDGPYSLVMEPKGLSLYYKSPNSPRPMLYWTSSEWFTVDQGSLVNLTLTSVPDTDEGFLYYLTFDYFTTKSSSNRNMAFTRYNNTLSYLRLGIDGNLRFYTYNPNVQGVAWELVYTFLDRDSMEGECQLPGRCGNFGLCEDSQCVACPTPNGLSGWSKDCDVKKVTSCKESEFGYYKLQGVDHFMIKYTRGDGATKQSDCESKCTKDCKCMGYFYHTEGSRCWIAYDLKTLTRVGNSTHLAYIKTPNK 359
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02728 359 ProSiteProfiles Bulb-type lectin domain profile. 1 82 IPR001480 -
Bial16g02728 359 CDD B-lectin 1 84 IPR001480 -
Bial16g02728 359 Gene3D - 13 143 IPR036426 -
Bial16g02728 359 Pfam S-locus glycoprotein domain 152 263 IPR000858 GO:0048544(InterPro)
Bial16g02728 359 SMART blect-4 1 84 IPR001480 -
Bial16g02728 359 CDD PAN-AP-plant 278 357 - -
Bial16g02728 359 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 11 357 IPR051343 -
Bial16g02728 359 Pfam D-mannose binding lectin 13 95 IPR001480 -
Bial16g02728 359 SUPERFAMILY alpha-D-mannose-specific plant lectins 8 146 IPR036426 -
Bial16g02728 359 Pfam PAN-like domain 285 335 IPR003609 -
Bial16g02728 359 ProSiteProfiles PAN-Apple domain profile. 279 357 IPR003609 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02728 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
189317 Bial4g03343 Bial16g02728
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:70163506 Bial4g03344 Bial-Chr4:76299058 dispersed
Bial Bial-Chr16:70153241 Bial16g02728 Bial-Chr16:70163506 tandem
Bial Bial-Chr16:70163506 Bial16g02729 Bial-Chr16:70170211 tandem