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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02868 ATGGGTTACCATTGTGATCATTGTGGGGATGCAAGGTCAATGGTGTATTGTAGATCGGATGCAGCCTATTTATGTTTATCGTGTGATCGCGATGTTCATTCTGCAAACGCGTTATCTAAACGACATTCAAGAGCACTCGTGTGTGATAGGTGCAATTCACAGCCTGCATTGGTTAGATGCATAGAAGAAAAAGTATCACTTTGTCAAAACTGTGATTGGGTCGGTCATAACGGGTCAACGAAGCATACTAAACTAACGTTAAATTGCTATTCGGGTTGTCCTTCGGCTGAAGAACTTTCTTCCATTTGGTCGTTTATGTCAGGTTCAGATTCGGGCTTTGTTAACGGGTCTGCTTGTGAGCAAGAAATGGGCTCAATGAGCATTGCTGATAACAATAATATCAACAATAACAATCAAGATTTACTTGCAAGTGGAAATAATTCAAACGTTTGGATGGGTCCCACGAGTGTTAATGTCGATACTAGGCCACAAATAGTTCAACAAGTTGGGCCCGTATGTTCTTCTGCATCGAAGGTATCACATTCGGGGACAAAAGACCCTGAGCCCGTTGGTGGTGATGACGGGTTCTATGCTGACTTTAGTATGGACGAAGTCGACTTGAGCATCGAGAACTATGAAGAACTCTTTGGTGTAGGGCATAATGATCCCAAACATCTTTTTGCGAAAGACGGGATTGATAGTTTGTTTGGTGGTGCTGAATCTTCATATGTTGGAAAGGAATCTTCAACAGGACATGCAAATCAAGCACAACCGGCATGCAGTAATGCAGCCTCAGCCGATTCATTAATGAGCTGTAAAACTGAACCGAACCATGGTTATGCAAGGCAACACTCGAATATCTCGTTCTCAAGTCTCACAGGGGAAAGCACTGCTAATGATTATCAAGACTGTGGGGCTTCCTCAATGTTCCTCTCAGGCGAGCCACCATGGTACAACTCGGGCCCAGGCCCGAACCTTGATCCCGCCACCCTTTCTGGTAGCAGAAGTGATGCAGTCCAACGTTACAAGGAAAAAAAGAAAATGAGAAAATTTGACAAGAGAGTAAGATATGCTACACGAAAGGAACGTGCGGATGTAAGAAAGCGTGTGAAAGGTCGGTTTGTGAAGGCAGGTGACGCTTATGATTACGACCCGTTGAGTCAAACCCGAAGCTTTTAG 1179 44.19 MGYHCDHCGDARSMVYCRSDAAYLCLSCDRDVHSANALSKRHSRALVCDRCNSQPALVRCIEEKVSLCQNCDWVGHNGSTKHTKLTLNCYSGCPSAEELSSIWSFMSGSDSGFVNGSACEQEMGSMSIADNNNINNNNQDLLASGNNSNVWMGPTSVNVDTRPQIVQQVGPVCSSASKVSHSGTKDPEPVGGDDGFYADFSMDEVDLSIENYEELFGVGHNDPKHLFAKDGIDSLFGGAESSYVGKESSTGHANQAQPACSNAASADSLMSCKTEPNHGYARQHSNISFSSLTGESTANDYQDCGASSMFLSGEPPWYNSGPGPNLDPATLSGSRSDAVQRYKEKKKMRKFDKRVRYATRKERADVRKRVKGRFVKAGDAYDYDPLSQTRSF 392
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02868 392 CDD Bbox1-BBX-like 5 44 IPR049808 -
Bial16g02868 392 CDD Bbox1-BBX-like 47 87 IPR049808 -
Bial16g02868 392 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 381 - -
Bial16g02868 392 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Bial16g02868 392 SMART bboxneu5 48 87 IPR000315 GO:0008270(InterPro)
Bial16g02868 392 Pfam CCT motif 335 377 IPR010402 GO:0005515(InterPro)
Bial16g02868 392 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Bial16g02868 392 ProSiteProfiles CCT domain profile. 335 377 IPR010402 GO:0005515(InterPro)
Bial16g02868 392 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02868 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
26354 Bial15g01611 Bial16g02868
28259 Bial16g02868 Bial3g01677
28260 Bial16g02868 Bial3g03112
189378 Bial4g03465 Bial16g02868
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr14:4053780 Bial16g02868 Bial-Chr16:73144052 dispersed
Bial Bial-Chr15:74583540 Bial16g02868 Bial-Chr16:73144052 dispersed
Bial Bial-Chr16:73144052 Bial4g03465 Bial-Chr4:78983178 dispersed
Bial Bial-Chr16:73130626 Bial16g02868 Bial-Chr16:73144052 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bial18g01636 BST,WGDA 1 105 C2C2-CO-like Transcription Factor family AT4G38960 85.714 1.02e-65 196.0
Bial18g01684 ACH 1 73 C2C2-CO-like Transcription Factor family AT4G27310 56.757 1.09e-23 95.5
Bial18g02137 ACH,BST,WGDA 4 94 C2C2-CO-like Transcription Factor family AT5G54470 57.609 2.14e-29 106.0
Bial2g00315 . 1 355 C2C2-CO-like Transcription Factor family AT5G57660 47.632 2.75e-97 291.0
Bial2g00335 ACH,BST,WGDA 289 399 C2C2-CO-like Transcription Factor family AT1G68520 48.214 1.57e-21 93.6
Bial2g00672 ACH,BST,WGDA 14 373 C2C2-CO-like Transcription Factor family AT5G48250 56.011 1.86e-125 362.0
Bial2g01508 WGDA 282 329 C2C2-CO-like Transcription Factor family AT5G57660 56.25 4.80e-13 66.6
Bial2g01527 ACH,BST,WGDA 1 331 C2C2-CO-like Transcription Factor family AT1G75540 42.733 4.72e-77 236.0
Bial2g01688 BST,WGDA 12 398 C2C2-CO-like Transcription Factor family AT2G33500 39.387 3.02e-75 242.0
Bial2g01787 . 1 73 C2C2-CO-like Transcription Factor family AT4G27310 54.054 9.22e-24 91.3
Bial2g01788 . 3 74 C2C2-CO-like Transcription Factor family AT4G27310 57.534 1.96e-24 93.2
Bial8g02530 WGDA 283 346 C2C2-CO-like Transcription Factor family AT5G57660 51.562 9.14e-16 73.6
Bial8g02488 ACH,BST,WGDA 1 211 C2C2-CO-like Transcription Factor family AT1G75540 55.924 4.12e-74 224.0
Bial12g00982 ACH,BST,WGDA 13 347 C2C2-CO-like Transcription Factor family AT3G02380 49.422 3.49e-102 302.0
Bial3g03176 ACH 1 224 C2C2-CO-like Transcription Factor family AT1G75540 50.435 1.26e-61 195.0
Bial3g03112 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 53.867 1.59e-129 377.0
Bial24g00953 ACH,BST,WGDA 13 347 C2C2-CO-like Transcription Factor family AT3G02380 49.422 4.73e-102 301.0
Bial3g02155 ACH,BST 188 276 C2C2-CO-like Transcription Factor family AT2G24790 43.82 3.27e-12 64.3
Bial8g00479 BST 10 321 C2C2-CO-like Transcription Factor family AT1G68190 34.77 1.60e-55 184.0
Bial12g02402 ACH,BST,WGDA 1 373 C2C2-CO-like Transcription Factor family AT5G48250 53.695 5.29e-133 384.0
Bial12g02488 ACH,BST,WGDA 1 205 C2C2-CO-like Transcription Factor family AT1G75540 51.923 3.14e-61 192.0
Bial4g03464 BST,WGDA 235 331 C2C2-CO-like Transcription Factor family AT5G48250 57.426 5.33e-22 92.8
Bial4g03465 ACH,BST,WGDA 1 372 C2C2-CO-like Transcription Factor family AT3G07650 52.941 8.52e-132 381.0
Bial7g00762 ACH,WGDA 309 386 C2C2-CO-like Transcription Factor family AT5G24930 41.772 6.07e-12 64.7
Bial13g02318 BST,WGDA 45 406 C2C2-CO-like Transcription Factor family AT5G24930 49.606 1.50e-98 296.0
Bial13g00851 ACH 334 394 C2C2-CO-like Transcription Factor family AT5G24930 49.18 1.38e-11 63.9
Bial20g02222 ACH,BST,WGDA 1 331 C2C2-CO-like Transcription Factor family AT1G75540 42.09 4.37e-72 222.0
Bial6g03269 . 294 339 C2C2-CO-like Transcription Factor family AT5G57660 52.174 5.32e-08 47.0
Bial18g03264 BST,WGDA 289 400 C2C2-CO-like Transcription Factor family AT1G68520 40.845 7.97e-21 90.1
Bial16g02993 BST 1 196 C2C2-CO-like Transcription Factor family AT1G75540 51.531 9.12e-60 187.0
Bial4g03648 BST 1 123 C2C2-CO-like Transcription Factor family AT4G39070 67.48 2.18e-56 175.0
Bial1g02817 ACH,BST,WGDA 289 399 C2C2-CO-like Transcription Factor family AT1G68520 39.286 1.15e-16 79.0
Bial24g02255 ACH,BST,WGDA 1 331 C2C2-CO-like Transcription Factor family AT5G48250 50.0 1.69e-105 312.0
Bial24g02337 ACH,BST,WGDA 1 196 C2C2-CO-like Transcription Factor family AT1G75540 53.731 4.78e-60 189.0
Bial22g01965 BST 309 388 C2C2-CO-like Transcription Factor family AT5G24930 38.75 2.68e-11 62.8
Bial2g02589 ACH,BST 284 351 C2C2-CO-like Transcription Factor family AT5G57660 38.235 5.35e-06 45.4
Bial11g02446 ACH 1 330 C2C2-CO-like Transcription Factor family AT1G75540 45.797 1.13e-72 225.0
Bial1g02376 . 34 277 C2C2-CO-like Transcription Factor family AT1G78600 36.111 1.41e-37 130.0
Bial1g02416 BST,WGDA 1 371 C2C2-CO-like Transcription Factor family AT3G07650 52.685 2.96e-123 358.0
Bial17g00622 BST,WGDA 116 270 C2C2-CO-like Transcription Factor family AT2G24790 29.936 1.69e-12 63.9
Bial17g00546 BST,WGDA 237 320 C2C2-CO-like Transcription Factor family AT1G49130 49.425 7.11e-19 81.3
Bial17g00152 BST,WGDA 10 328 C2C2-CO-like Transcription Factor family AT2G47890 43.264 2.10e-92 279.0
Bial21g01148 BST,WGDA 70 273 C2C2-CO-like Transcription Factor family AT2G24790 38.991 5.48e-33 123.0
Bial14g00374 BST,WGDA 1 373 C2C2-CO-like Transcription Factor family AT5G48250 56.764 8.23e-135 387.0
Bial19g01568 ACH,BST,WGDA 9 347 C2C2-CO-like Transcription Factor family AT3G02380 52.493 6.65e-121 352.0
Bial19g02424 ACH,BST,WGDA 7 328 C2C2-CO-like Transcription Factor family AT2G47890 45.869 6.05e-91 274.0
Bial19g02588 ACH,BST,WGDA 3 221 C2C2-CO-like Transcription Factor family AT3G21150 25.551 3.38e-13 63.9
Bial5g01035 BST,WGDA 11 328 C2C2-CO-like Transcription Factor family AT2G47890 43.799 1.25e-91 277.0
Bial5g01957 ACH,BST,WGDA 4 91 C2C2-CO-like Transcription Factor family AT5G54470 59.551 2.23e-30 109.0
Bial7g01687 ACH,BST,WGDA 9 347 C2C2-CO-like Transcription Factor family AT3G02380 45.309 2.50e-111 330.0
Bial7g02433 ACH,BST,WGDA 7 328 C2C2-CO-like Transcription Factor family AT2G47890 45.559 5.70e-92 276.0
Bial7g02581 ACH,BST,WGDA 122 221 C2C2-CO-like Transcription Factor family AT3G21150 30.841 8.96e-07 46.2
Bial7g02711 ACH,BST,WGDA 282 331 C2C2-CO-like Transcription Factor family AT5G15850 48.0 3.58e-10 57.4
Bial14g01174 ACH,BST,WGDA 1 331 C2C2-CO-like Transcription Factor family AT1G75540 43.567 4.42e-78 238.0
Bial14g01318 . 12 372 C2C2-CO-like Transcription Factor family AT2G33500 36.224 1.17e-55 193.0
Bial14g01319 BST,WGDA 12 398 C2C2-CO-like Transcription Factor family AT2G33500 38.756 2.13e-74 236.0
Bial14g01360 BST 287 398 C2C2-CO-like Transcription Factor family AT1G68520 39.568 1.99e-19 85.9
Bial14g01808 BST,WGDA 4 135 C2C2-CO-like Transcription Factor family AT5G54470 47.368 3.35e-28 104.0
Bial17g02015 ACH,BST 284 351 C2C2-CO-like Transcription Factor family AT5G57660 38.235 6.06e-06 45.4
Bial9g01149 BST,WGDA 3 273 C2C2-CO-like Transcription Factor family AT2G24790 44.523 5.69e-71 220.0
Bial15g02411 ACH,BST 188 276 C2C2-CO-like Transcription Factor family AT2G24790 43.82 4.32e-12 64.3
Bial15g02038 WGDA 4 273 C2C2-CO-like Transcription Factor family AT2G24790 49.153 7.99e-85 255.0
Bial15g01700 . 3 223 C2C2-CO-like Transcription Factor family AT4G27310 38.914 2.89e-34 119.0
Bial23g01597 . 14 347 C2C2-CO-like Transcription Factor family AT3G02380 46.437 1.23e-107 319.0
Bial20g01503 ACH,BST 257 331 C2C2-CO-like Transcription Factor family AT5G57660 42.667 2.98e-09 55.1
Bial15g01611 ACH,BST,WGDA 1 373 C2C2-CO-like Transcription Factor family AT5G48250 53.59 1.69e-131 379.0
Bial16g02868 ACH,BST 1 372 C2C2-CO-like Transcription Factor family AT3G07650 52.941 5.63e-132 381.0
Bial16g02867 BST,WGDA 193 373 C2C2-CO-like Transcription Factor family AT5G48250 45.304 5.85e-37 133.0
Bial3g01727 . 1 297 C2C2-CO-like Transcription Factor family AT1G78600 51.935 6.90e-96 283.0
Bial3g01677 ACH,BST,WGDA 1 373 C2C2-CO-like Transcription Factor family AT5G48250 53.571 1.57e-132 382.0
Bial1g02068 BST,WGDA 45 406 C2C2-CO-like Transcription Factor family AT5G24930 49.868 2.94e-96 290.0
Bial20g00237 BST 229 321 C2C2-CO-like Transcription Factor family AT1G68190 35.484 5.61e-10 53.1
Bial13g02671 ACH,BST,WGDA 1 371 C2C2-CO-like Transcription Factor family AT3G07650 53.03 1.39e-122 357.0
Bial16g02433 BST 211 319 C2C2-CO-like Transcription Factor family AT3G02380 31.193 5.04e-10 57.0
Bial11g01891 . 14 347 C2C2-CO-like Transcription Factor family AT3G02380 47.368 3.17e-108 320.0
Bial6g01579 BST,WGDA 1 183 C2C2-CO-like Transcription Factor family AT4G38960 42.081 2.25e-46 148.0
Bial6g01585 BST 287 400 C2C2-CO-like Transcription Factor family AT1G68520 42.029 2.06e-20 88.2
Bial6g02043 BST,WGDA 4 135 C2C2-CO-like Transcription Factor family AT5G54470 46.617 4.06e-29 107.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Bial CCT 1.8e-15 CL0281 TF C2C2-CO-like