AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02893 ATGTTTGTATGTCGCTTTGTTAGATTTGGTTATAGGTTAGATATACTTGATATGGATTTCTCAGAATCTACGAAAGTCGTATACGATCGAGTCCAAAAAATCGAACCCGAAAACGTGTCCAAGATTATCGGGTACCTTCTGTTACAAGATCATGGCGAACGGGAAATGATACGTTTAGCATTCGGGCCGGATAATTTAATACACGGGTTAATCAAACAAGCCCGGACCCACCTTAACCTAGCTTCGAACACATCCGGTCAACCGCTTTCACCTCCTAGGGTCAACTCGATGCCCGAGATGCCAATCGGCCCGATTCACTTCACACCGTTCTCTCCTTCGACCCGTCATTCACCGTTAACGATCCAAGTGCCGAACCGTTGTTGTGACCATCATGGTCAACCGGTTGACTTTGTCCCGATGGTTTACCCGGCTTCGTATCCTGAGGATTATAACCTTCACAACCACCTTCGCTTCATGTCGTTAGAGGATCAAATGGAGCCCGTTAACAGCCCCGATTTGGGCCCACGGGCTAATCGGAGGTCGCCGAGTTTACCTGAGTTTCCGTTTAAAGTTTGTCATTATTTCATCAAAGGGTTTTGTAGACATGGAAACAATTGTAGGTATTTGCATCCTACCCCTGAAAGCTTTTCGCAAATCTTTAGCCCTAAATTTGAGGACGAAAACGTCTTTTCGCCCATGTCACTCGAGAAATTAGAGATGGAACTCACGGAGTTACTGAAATCAAGACGCGGGTTTCCGGTTTCCATAGCTTCTTTACCAATGATATATTATGAAAAGTTCGGTAAAACCCTTCAAGCTGACGGGTATTTGACCGAAAGTCAAAGACACGGGAAAGCCGGTTATAGTTTGACCAAACTTCTCGCTCGCCTTAAAAGCATTTGTCTCATTGACAGGCCACATGGGCAACACGCGGTGGTGCTAGCTGATGACATGGCAAAATTTATGGATCATATTGGAGATAGAAACGAACACGGTGGAATTGTGGCAGGCTCTCGACAGATATATTTGACTTTTCCAGCTGAAAGTACATTTTCCGAGCTCGACGTTTATAATTATTTCAACAAATTTGGGCCTGTTCGTGACGTGAGAATCCCATGTCAGCAAAAGAGAATGTTTGGATTCGTGACATTTGTGTTTGCAGATACTGTTAGGCATATTTTAAACAAGGGGAATCCTCATTTTGTTAGCGGTGCACGTGTTTTGGTCAAACCGTACCGTGAAAAATGCAAGATCGATGATAGGAAAAATGGTTTCGCGTATCAGCATCCTATGTACCAAGGTTCTCACTGTCTTGATACCGAACTTGGGCTGGAGTCAAGCAATGCTCATGGACAACAAACGGACTTCCATTCGAACGAGCGTTTTAACTATTTTCTCGATGTTTTAAACAACAGTTCCGTCAGTGAACAAAATATTAGTCAGATTAATACCAAATACAACGAGCAAGAAAGTGGCCAGGGACTGAATCTTCCGGATAGCCCATTTGCATCGGGATTAGGGGGCGAAATACCGACAGTTATATAG 1545 44.01 MFVCRFVRFGYRLDILDMDFSESTKVVYDRVQKIEPENVSKIIGYLLLQDHGEREMIRLAFGPDNLIHGLIKQARTHLNLASNTSGQPLSPPRVNSMPEMPIGPIHFTPFSPSTRHSPLTIQVPNRCCDHHGQPVDFVPMVYPASYPEDYNLHNHLRFMSLEDQMEPVNSPDLGPRANRRSPSLPEFPFKVCHYFIKGFCRHGNNCRYLHPTPESFSQIFSPKFEDENVFSPMSLEKLEMELTELLKSRRGFPVSIASLPMIYYEKFGKTLQADGYLTESQRHGKAGYSLTKLLARLKSICLIDRPHGQHAVVLADDMAKFMDHIGDRNEHGGIVAGSRQIYLTFPAESTFSELDVYNYFNKFGPVRDVRIPCQQKRMFGFVTFVFADTVRHILNKGNPHFVSGARVLVKPYREKCKIDDRKNGFAYQHPMYQGSHCLDTELGLESSNAHGQQTDFHSNERFNYFLDVLNNSSVSEQNISQINTKYNEQESGQGLNLPDSPFASGLGGEIPTVI 514
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02893 514 ProSiteProfiles OST-type HTH domain profile. 234 317 IPR025605 -
Bial16g02893 514 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 346 417 - -
Bial16g02893 514 Gene3D - 186 268 - -
Bial16g02893 514 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 414 IPR000504 GO:0003723(InterPro)
Bial16g02893 514 ProSiteProfiles Zinc finger C3H1-type profile. 186 213 IPR000571 GO:0046872(InterPro)
Bial16g02893 514 SUPERFAMILY CCCH zinc finger 189 211 IPR036855 GO:0046872(InterPro)
Bial16g02893 514 Pfam RNA recognition motif 352 398 IPR000504 GO:0003723(InterPro)
Bial16g02893 514 SMART rrm1-1 340 410 IPR000504 GO:0003723(InterPro)
Bial16g02893 514 Gene3D - 345 427 IPR012677 -
Bial16g02893 514 SUPERFAMILY RNA-binding domain, RBD 351 428 IPR035979 GO:0003676(InterPro)
Bial16g02893 514 SMART c3hfinal6 188 212 IPR000571 GO:0046872(InterPro)
Bial16g02893 514 PANTHER RNA-BINDING (RRM-RBD-RNP MOTIFS) 18 447 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02893 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
189399 Bial4g03492 Bial16g02893
363428 Bial12g02424 Bial16g02893
368957 Bial16g02893 Bial24g02276
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr14:13158393 Bial16g02893 Bial-Chr16:73405015 dispersed
Bial Bial-Chr16:73405015 Bial2g01297 Bial-Chr2:16561534 dispersed
Bial Bial-Chr12:54472086 Bial16g02893 Bial-Chr16:73405015 wgd
Bial Bial-Chr16:73405015 Bial24g02276 Bial-Chr24:53353584 wgd
Bial Bial-Chr16:73405015 Bial4g03492 Bial-Chr4:79263416 wgd