AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02927 ATGGATGCATTCAATTCACTCAACATTCGTGACTTATTATCCTCCACGGACCTCGACGAGTCGTCACCACTCTCCGCACCGGACCTCCGATTAATCTCCGACCGTCTGGACATCCAATTACTGAACAGCAAGTCCAAAGTCCAAAACCACATCCTCACACACCACACGGACTACCTCAACCTCTTCTCCCAATCCTCCTCCGCCGTCCGTAACTCCGAACAATTATCCGAACTCGTAACCGAATTAACTAACCTGTTATCGCGGAATCTGATAGATGTGGAGGTTAAGGAGATAGTTGATGAGATTAGGTTGAGTAGGATTGAGTTGAGGGAGAAGGAGGAGGAGTTAGGGTTAGTGGAGATTGTGGTGAAGTTGAGAGATGAGTTGAGTGGAGTTGAGGTGGATTTGGAGGGTGGGAAGGTTGTGGAGGCGGCCGAGAGGGTTACGGAGTTGAAGAAGGCGTTGCGAGTCGAGGACGGGGCGGAGGAGGGTGAGCCGGTTGTGTATGGGGTGTTGAGGAAGAAATGGACCGATTGCTTCGAGAAGATACAACAAGTGCTAGTCAAGCTCATTGAGAATGCAGTGAGATTTGATCAACAATCCAACTCTGTTTATGTCAAGAACACAGTGTCTATGAATGATATTCAAGGAATTGAGCTTTGTACTGTTCTGAAAGCAATGCATGTAATTGGTATTCTGGATTATGGGCTTGCCAAAGTAGCAGATTTGATGACCAGGCATGTAATAACTCCTGCAGTGCGATCACTTTCCCACAGTTTTTCTGTAGAAGAAAAAAGATCAGACTCAGGAGATATAACTGAAGCAGTTTTGAAAATAATACCACTTTCCGGTACTCAGGTTGAGAACATGGATGCTGAAAATCTTTATTCTGGAATCAATGTAATCGTTCAGTTTATCTTCAACCATATTTGCTTTCAAAATACTTCTTGGATGCAATTATTTGGAAGATTAACATGGCCTCACATGTCAGAATTGATTATTTCAAACTTCCTTTCCAAGATTGTTCCGGATGATGCTTCCAAACTTTCAGGCTTCCAAACAATAAGACAACTTACATCTGAGTTTGAAACATCTCTTAAAGAAGTTAAGTTCATATCTTCTGAGAAAGATGAAAGATTGACCAATTTTACTGATAATGTCGAAGTTCACTTTGCAACAAGGAAGAAGGTTGAGATATTAGCAACAGCTAGAGACCTTCTTCTACATTCAGACTTTAAACTTCCTAATGATTATTCAAGGAAAAGTGAAGATATTAAAAAAGGTGGGAATGTAGACTTGCTTTTCTCGTCTGAGAGGTGTGCCATATCTGAAGCGGCTTCACAGCTATTGGAACTAGTGCATCAAACACTCAAGGATGTTTGTTTGTCATCCCCAACAGTTGCTTTAGAATTTTACCATGCTGCTAGGGATGCTTTACTCCTATATGAAGCTGTTATTCCTGTCAAGCTAGAACGACAGCTGGATGGTATCAACCAGGTTGCGGTTCTAATTCATAACGATTGCCTCTTCTTATCGCAAGAGATTCTTGGCCTTAAATTTGAGTATCAGTCAGATTTCCCACCTTCCGTGAAAGGAGCCGTGTTTATTGATTTAGGCATAAGATACAAACTAATGGCAGAAGAGATATTACAAAGACAAATAAACCTTGTTAAGCATAATTTGATGGAGGCAATTGACGGTGCAGATGGATTTCAAAACACCCATCAACCAAAACGATACGAATCCGCAAAATTCAGTATCGATCGGGTGGCTTTTATCCTTGAGAAAGTGCATATAATTTGGGAGCCGTTATTGTTACCGTTAACATACAAACGAAGTATGTGCACTGTTTTGGAGGCTGTGTGTTCGAGAATGACTAAAGACATACTTCTCTTAGATGATATTGCAGCTGAAGAAACATTACAGATTCAAAGATTAATTCAGATGTTACTGGAAAACCTTTCATCTTTATTGGAGTCATTGGTTGGTATTAAACAAACAACAAAAGCGCAAGAAGCATCGCCAGCCTCTATTGATGATCTAATCCCGTCACTCCCACAGTTGCGGATATTGGCAGATATGCTGGACATGCCTCTAAAGACTATAACTGCATATTGGGAAAGTGGTGAACTGGCGAACTGTGGTTTTACGTCATCTGAGGTGAAAGACTTTATCAGAGCGATATTTGCGGATTCGCCCTTACGGAAAGAATGCCTGTGGAGGATTGAAAATATCAAGTTTTAG 2244 41.35 MDAFNSLNIRDLLSSTDLDESSPLSAPDLRLISDRLDIQLLNSKSKVQNHILTHHTDYLNLFSQSSSAVRNSEQLSELVTELTNLLSRNLIDVEVKEIVDEIRLSRIELREKEEELGLVEIVVKLRDELSGVEVDLEGGKVVEAAERVTELKKALRVEDGAEEGEPVVYGVLRKKWTDCFEKIQQVLVKLIENAVRFDQQSNSVYVKNTVSMNDIQGIELCTVLKAMHVIGILDYGLAKVADLMTRHVITPAVRSLSHSFSVEEKRSDSGDITEAVLKIIPLSGTQVENMDAENLYSGINVIVQFIFNHICFQNTSWMQLFGRLTWPHMSELIISNFLSKIVPDDASKLSGFQTIRQLTSEFETSLKEVKFISSEKDERLTNFTDNVEVHFATRKKVEILATARDLLLHSDFKLPNDYSRKSEDIKKGGNVDLLFSSERCAISEAASQLLELVHQTLKDVCLSSPTVALEFYHAARDALLLYEAVIPVKLERQLDGINQVAVLIHNDCLFLSQEILGLKFEYQSDFPPSVKGAVFIDLGIRYKLMAEEILQRQINLVKHNLMEAIDGADGFQNTHQPKRYESAKFSIDRVAFILEKVHIIWEPLLLPLTYKRSMCTVLEAVCSRMTKDILLLDDIAAEETLQIQRLIQMLLENLSSLLESLVGIKQTTKAQEASPASIDDLIPSLPQLRILADMLDMPLKTITAYWESGELANCGFTSSEVKDFIRAIFADSPLRKECLWRIENIKF 747
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02927 747 Pfam ZW10 C-terminal helical domain 586 742 - -
Bial16g02927 747 Coils Coil 95 115 - -
Bial16g02927 747 Pfam Centromere-kinetochore protein zw10, middle domain 172 407 IPR048344 -
Bial16g02927 747 Gene3D - 540 746 IPR046362 -
Bial16g02927 747 PANTHER CENTROMERE-KINETOCHORE PROTEIN ZW10 1 744 - GO:0006888(PANTHER)|GO:0007094(PANTHER)|GO:1990423(PANTHER)
Bial16g02927 747 Pfam Centromere-kinetochore protein zw10, C-terminal 435 563 IPR048343 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02927 K11578 protein transport protein DSL1/ZW10
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Event-related genes

Select Gene_1 Gene_2 Event_name
189412 Bial4g03524 Bial16g02927
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:74031010 Bial4g03524 Bial-Chr4:79884495 dispersed
Bial Bial-Chr16:74029896 Bial16g02927 Bial-Chr16:74031010 tandem