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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02952 ATGCACCTTCTACTCCATCCTACTCCAACCCTTTGCTCTTACTCCGACCACCATCCTCCACCACCCCACCACCACCTCCAATTCAAACCATCCCACCGGACCGATATCAGCTACCTCAAATCACTCGGTATCACCACAACCCCATCATCTCCACAAACCATCTCCCACCTCCTCAAAACCATCCACCTCTTCAAATCCAAAGGCTTCTCCGAACCCGACTTCCCACGCCTCGCATTCCTCGCCCCAAACGTCTTTGCCCCAACGTATAATCATACCATGATCACCTCGGTTTTTAACTTTCTAACGGTCGAATTATCAACGTCACCACAGGATGCCAGAACATTATTACTAAAATGCCCTCGGTTACTCGAGTCAGACCCGGAATCATGTTTAAAACCAACTTTAGAATATCTAAAAAGCTTGGGCATTACGCGGTTGAACAATGCGAGTACTCTGACTGCGCATTTGTTGAATTCAAGAGTTGACAAGTTGGAAGAGAAGATGAGGTTTTTGGAGGGGGTTGGGTTTAGTAGAGAGGAGTCGAGGCGGGTTTGTGGGCGGTTTCCGGCGATATTCGAGTATGGGATTGAGAATAATTTGAAGGTGAAGTATTTGTATTTGGTGAAGGATATGAAGAGAAATGGGGTAGAGGAAGTGAATAAGTTTCCAATGTATTTTGGGTTTACTTTAGATAAGAGGATTAAGGTTAGACATTTGCATTTGAAACATAGGGGTGTTGATGGTGTGGTGCCTTTGAATAGGATGTTGTTGTGGAGTGATCATAGGTTTTATAAAAAATGGAAATAA 807 44.36 MHLLLHPTPTLCSYSDHHPPPPHHHLQFKPSHRTDISYLKSLGITTTPSSPQTISHLLKTIHLFKSKGFSEPDFPRLAFLAPNVFAPTYNHTMITSVFNFLTVELSTSPQDARTLLLKCPRLLESDPESCLKPTLEYLKSLGITRLNNASTLTAHLLNSRVDKLEEKMRFLEGVGFSREESRRVCGRFPAIFEYGIENNLKVKYLYLVKDMKRNGVEEVNKFPMYFGFTLDKRIKVRHLHLKHRGVDGVVPLNRMLLWSDHRFYKKWK 268
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02952 268 PANTHER CGI-12 PROTEIN-RELATED 37 266 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Bial16g02952 268 SMART mt-12 149 177 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Bial16g02952 268 SMART mt-12 113 144 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Bial16g02952 268 SMART mt-12 216 247 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Bial16g02952 268 SMART mt-12 182 214 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Bial16g02952 268 Gene3D Transcription termination factor 3, mitochondrial 36 268 IPR038538 -
Bial16g02952 268 Pfam mTERF 57 147 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Bial16g02952 268 Pfam mTERF 109 263 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Bial16g02952 268 Coils Coil 154 174 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02952 K15031 mitochondrial transcription termination factor family protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr16:74522279 Bial22g03071 Bial-Chr22:44656584 dispersed
Bial Bial-Chr16:74522279 Bial4g03607 Bial-Chr4:81506729 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Bial mTERF 1.6e-29 No_clan TR mTERF