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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02955 ATGTACGATTTCTCTGAGGAACCGAAACCCAATTTATGCCCGTGTGTCAGGTCAGGTCTTGTGCTCGTGCTCGTGTTGGTTCATCGACAAATGGCTGCCATTTTAGCTCGCAAATCGATCTCAGCTATTCGTAATCGACAGCTTGTTTTGGCAGGACAAGTGTTGCAGGGCTCTAACAATGGGACAATTTCGGGTGCTCGCTCGTTTGCAACCAAACACTCATTCTCAACTGATAAAGATGATGAGGAAAGAGAAAAGCTTGCAAAGGAGATCTCGAAAGACTGGAGTTCTGTTTTCGAGCGAAGCATCAATACTCTATTTTTAACTGAATTGGTTCGAGGCCTGTCTTTGACACTCAAATACTTCTTTGAACCGAAAGTTACTATTAATTATCCATTTGAAAAGGGTCCTTTGAGCCCTCGGTTTCGTGGTGAACACGCCCTCAGACGTTATCCAACTGGAGAAGAACGTTGTATTGCCTGTAAACTTTGTGAAGCTATATGCCCTGCTCAAGCCATCACTATAGAAGCAGAGGAACGAGAAGATGGCAGCCGTAGAACAACAAGGTATGACATTGATATGACAAAGTGTATATACTGTGGATTCTGCCAAGAAGCATGCCCTGTTGATGCAATCGTCGAAGGACCTAACTTCGAGTTTGCTACCGAGACCCACGAGGAACTCTTGTATGATAAGGAGAAGCTTCTTGAAAACGGGGATCGATGGGAAACCGAGATTGCTGAGAACCTTAGATCCGAGAGCCTTTATCGATAA 774 44.57 MYDFSEEPKPNLCPCVRSGLVLVLVLVHRQMAAILARKSISAIRNRQLVLAGQVLQGSNNGTISGARSFATKHSFSTDKDDEEREKLAKEISKDWSSVFERSINTLFLTELVRGLSLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 257
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02955 257 Pfam 4Fe-4S dicluster domain 157 211 IPR017896 -
Bial16g02955 257 SUPERFAMILY 4Fe-4S ferredoxins 131 241 - -
Bial16g02955 257 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 105 241 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Bial16g02955 257 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 188 217 IPR017896 -
Bial16g02955 257 NCBIfam NADH-quinone oxidoreductase, chain I 114 235 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Bial16g02955 257 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 90 257 IPR010226 GO:0003954(PANTHER)|GO:0005747(PANTHER)|GO:0006120(PANTHER)|GO:0009060(PANTHER)|GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0032981(PANTHER)|GO:0045272(PANTHER)|GO:0051539(InterPro)
Bial16g02955 257 FunFam NADH-quinone oxidoreductase subunit I 1 131 254 - -
Bial16g02955 257 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 197 208 IPR017900 -
Bial16g02955 257 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 158 169 IPR017900 -
Bial16g02955 257 Gene3D - 131 256 - -
Bial16g02955 257 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 149 178 IPR017896 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02955 K03941 NADH dehydrogenase (ubiquinone) Fe-S protein 8 [EC:7.1.1.2]
Bial16g02955 K00338 NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
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Event-related genes

Select Gene_1 Gene_2 Event_name
26310 Bial15g01450 Bial16g02955
28273 Bial16g02955 Bial3g01521
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr15:55467432 Bial16g02955 Bial-Chr16:74543881 dispersed
Bial Bial-Chr16:74543881 Bial3g01521 Bial-Chr3:55041011 wgd
Bial Bial-Chr16:74543881 Bial4g03610 Bial-Chr4:81525767 wgd