AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial16g02983 ATGGGGTCCGCGTGTTGTGTTGCTGCTAGAGATAGAACTATAACAGATCGGTCTAGTAATGATATTATTATTACAAGAAATGATCATTATTCGCCATCCTGGAGCTTTAGGTGGGATAACCGGGGGCGTGTGGCGGGCGAAGACTCATCCATTAATGACAGGTTGGATAATAAGTCTCATACAACTGTGGAAACTGCTTATGCAACAGAAGGCAGCCCGTTGGACAGCTCTAGAAGCCTGACGTGGCAAAAATCACCACTTTCTGAAGAGATTGGGCTTCCTCAATTAGATACTCTGAGTTCCAAAAATCTTCATGAGGCGAAAGATCCAAGGGGAACCCAAACTCCAGTAGCTATGGAACTGTCTCCAACCAACATGTTGACCCCAGCGCATTCAATTTCATCCTTGTCAGCAGCATCTCCTTTGTCTTCGTCCCAAAGTCAACTCATGCCCATGTCAAGTTTAACCCCGTCAAGATGGTCCCGCCGCTCGCCAGGTCACCATCATCTACTCCGTCAAGTATCAGATAGCCGAATTCGTGGCATGATGTCACCAAACTTCTCAATATCCGAAGACGGTTCTCCTTTTATGCACCACCCCGGGTGGACTAATAAGTCAAACATCGGGTCCCATGGCGGTTCTTCAGATAGCTGGTCAAATAGAGATAGATGGTCTTTTGACAGTGATGCTATGAGCTTTAGTCGTGATAGATTTAGCCGATCTAGGGTGTCTTCCTCTCCAACCGTTGAGATCGTGGCATGTGGCATCTGTTCCAAGCTTTTAACCGAACGGTCCACTTGGAGCAGCCATAAAGTCATGGCTAATAACGGGCTTCCCATTGTGTCCGTTCTGATTTGTGGGCACGTTTATCACGCTGAGTGTTTGGAAAACATGACATCCGAGATCAATAAGTATGACCCCGCATGTCCCGTTTGTACTTTGGGAGAAAAAAAGGTTATTAAGATGTCAGGTGAAATGGATTTCAAGGGCAAAATCGGAAAGAAGTTAAGTCGCCATGTGGTTGATGGTGGCAATTCTGGTATTTTTAATCAGTTTACAAATGGCAGGGGTCCCGTGATGGGGTCGAGTTCTAGCATGAAAAGCTCTTCAAAAAAAAGAGATTTTTCTGGTCCAAATCGAGCAAGGAGTGAGGTTTTCGCTTTTATAAAGGTAGGGGATAAAAACAAAGACATAAATGTTTCTTATTTCACCTTCGTTGTCTTTGGGCGCTGA 1233 45.17 MGSACCVAARDRTITDRSSNDIIITRNDHYSPSWSFRWDNRGRVAGEDSSINDRLDNKSHTTVETAYATEGSPLDSSRSLTWQKSPLSEEIGLPQLDTLSSKNLHEAKDPRGTQTPVAMELSPTNMLTPAHSISSLSAASPLSSSQSQLMPMSSLTPSRWSRRSPGHHHLLRQVSDSRIRGMMSPNFSISEDGSPFMHHPGWTNKSNIGSHGGSSDSWSNRDRWSFDSDAMSFSRDRFSRSRVSSSPTVEIVACGICSKLLTERSTWSSHKVMANNGLPIVSVLICGHVYHAECLENMTSEINKYDPACPVCTLGEKKVIKMSGEMDFKGKIGKKLSRHVVDGGNSGIFNQFTNGRGPVMGSSSSMKSSSKKRDFSGPNRARSEVFAFIKVGDKNKDINVSYFTFVVFGR 410
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial16g02983 410 SMART ring-2 254 312 IPR001841 -
Bial16g02983 410 ProSiteProfiles Zinc finger RING-type profile. 254 313 IPR001841 -
Bial16g02983 410 PANTHER EXPRESSED PROTEIN 1 318 - -
Bial16g02983 410 MobiDBLite consensus disorder prediction 137 161 - -
Bial16g02983 410 MobiDBLite consensus disorder prediction 137 166 - -
Bial16g02983 410 MobiDBLite consensus disorder prediction 352 372 - -
Bial16g02983 410 MobiDBLite consensus disorder prediction 96 117 - -
Bial16g02983 410 SUPERFAMILY RING-U-box 248 313 - -
Bial16g02983 410 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 238 314 IPR013083 -
Bial16g02983 410 MobiDBLite consensus disorder prediction 352 378 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial16g02983 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
27254 Bial15g03281 Bial16g02983
28278 Bial16g02983 Bial3g03083
189595 Bial4g03637 Bial16g02983
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr14:4332461 Bial16g02983 Bial-Chr16:74944542 dispersed
Bial Bial-Chr16:74944542 Bial2g00697 Bial-Chr2:7647451 dispersed
Bial Bial-Chr15:80189768 Bial16g02983 Bial-Chr16:74944542 wgd
Bial Bial-Chr16:74944542 Bial3g03083 Bial-Chr3:75320061 wgd
Bial Bial-Chr16:74944542 Bial4g03637 Bial-Chr4:81961565 wgd