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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial18g00162 ATGGCTAGTCAGAATATTCAACATCAAACACAAGATTTGAATTTGGTGTTATCTAGTGATGCTAAACCGCGCCTTAAATGGACTCCTGAGCTTCACCAACGGTTCGTCGATGCTGTTGCTCAACTTGGAGGCCCAGAAAAAGCAACACCAAAGTCTTTGATGAGAGTCATGAGCATTCATGGGCTTACTTTGTACCACTTAAAGAGTCATTTGCAGAAATTTAGGCTTGGGAAAATTCAACAATCACCGGATTGTAGCGAAAGTAAGCAAGAAGAATATGTTGATGATCATAGAAGTGATGTCACTAGTACCGATCATATTGTTGAAGTCCCAAATCAGATTAACGAAAGCTTAAAGATTGCTCAAGCTTTGCAGATGCAAATGGAAGTGCAAAGGAAACTTCATGAACAAATAGAGGTGCAAAGACATTTGCAGTTGAGAATTGAGGCGCAAGGAAAGTATTTACAGTCGGTTTTAAAAAAGGCACAAGACACGCTTGCGGGGTATAATTCGTCTACTATAGAAGTGGAAGTAGCAAAAGCCGAGTTGTCAGAATTAGTTTCGATGGTGGACAATGGGTGCCCGAGTTCTTTGTCAGTACTTACCGAACTTGAAAATTCAACTTCAAAACCGGATCTCGAAAAGACCCCGAAAGAGAAATCGTCGCTAGAAAGCTCCTTAACGTCATCCGAGAGTTCGGGAAGAAACGAAAAGGGTAATCTTCTTTTGTCACTAATGGAGACGAAGCCCGAAATTCGGAGTGGAAGGAAGCGAAGTGGGAGTACAATTTCGGACGGAAATTGTCAAGTTAGTAAAAGTAAGAGGTTTGATTTGAATAGTGAATATGTGAATGATGTTGACTTTGACTTTGAGTCAAGGTCATACACATTAGATTTGAACTCCAAGTGA 909 40.59 MASQNIQHQTQDLNLVLSSDAKPRLKWTPELHQRFVDAVAQLGGPEKATPKSLMRVMSIHGLTLYHLKSHLQKFRLGKIQQSPDCSESKQEEYVDDHRSDVTSTDHIVEVPNQINESLKIAQALQMQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKAQDTLAGYNSSTIEVEVAKAELSELVSMVDNGCPSSLSVLTELENSTSKPDLEKTPKEKSSLESSLTSSESSGRNEKGNLLLSLMETKPEIRSGRKRSGSTISDGNCQVSKSKRFDLNSEYVNDVDFDFESRSYTLDLNSK 302
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial18g00162 302 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 280 IPR046955 GO:0003700(InterPro)
Bial18g00162 302 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
Bial18g00162 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 79 IPR017930 -
Bial18g00162 302 FunFam Myb family transcription factor 21 79 - -
Bial18g00162 302 SUPERFAMILY Homeodomain-like 21 76 IPR009057 -
Bial18g00162 302 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 77 IPR006447 GO:0003677(InterPro)
Bial18g00162 302 MobiDBLite consensus disorder prediction 205 269 - -
Bial18g00162 302 Gene3D - 21 80 - -
Bial18g00162 302 Pfam MYB-CC type transfactor, LHEQLE motif 119 164 IPR025756 -
Bial18g00162 302 MobiDBLite consensus disorder prediction 222 239 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial18g00162 K28175 GARP family transcription factor, PHR1 subfamily
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr18:2468336 Bial24g03036 Bial-Chr24:60754518 dispersed
Bial Bial-Chr18:2468336 Bial2g03197 Bial-Chr2:83886795 wgd
Bial Bial-Chr18:2468336 Bial9g02663 Bial-Chr9:71462724 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bial12g01370 BST,WGDA 82 156 G2-like Transcription Factor family AT5G42630 78.667 6.04e-36 125.0
Bial3g01429 BST 35 316 G2-like Transcription Factor family AT2G03500 42.414 3.66e-55 184.0
Bial15g00176 BST 1 432 G2-like Transcription Factor family AT2G03500 44.583 2.26e-102 309.0
Bial4g02227 BST 47 172 G2-like Transcription Factor family AT2G40260 38.889 5.89e-13 67.4
Bial4g01444 ACH,BST 1 335 G2-like Transcription Factor family AT3G10760 51.462 9.87e-75 229.0
Bial18g02660 BST,WGDA 1 245 G2-like Transcription Factor family AT5G45580 53.906 2.23e-77 234.0
Bial18g02637 BST,WGDA 1 386 G2-like Transcription Factor family AT1G32240 49.005 3.74e-86 264.0
Bial2g00724 BST,WGDA 6 328 G2-like Transcription Factor family AT2G03500 35.925 6.82e-55 185.0
Bial2g00930 BST,WGDA 36 417 G2-like Transcription Factor family AT2G20570 49.64 2.10e-102 308.0
Bial2g01134 . 276 355 G2-like Transcription Factor family AT4G28610 66.667 4.45e-28 104.0
Bial18g01406 ACH,BST,WGDA 1 257 G2-like Transcription Factor family AT2G01060 64.729 1.48e-100 291.0
Bial3g02465 ACH,BST 1 384 G2-like Transcription Factor family AT5G44190 41.146 2.79e-62 199.0
Bial1g01821 ACH 196 387 G2-like Transcription Factor family AT1G32240 60.199 1.14e-61 200.0
Bial8g00540 ACH,BST,WGDA 1 325 G2-like Transcription Factor family AT1G25550 42.735 4.34e-74 230.0
Bial6g00041 . 112 237 G2-like Transcription Factor family AT5G59570 53.901 1.69e-38 137.0
Bial12g03718 BST 185 324 G2-like Transcription Factor family AT5G06800 67.333 1.99e-64 205.0
Bial12g03574 BST 102 201 G2-like Transcription Factor family AT5G59570 64.486 4.92e-37 133.0
Bial7g03681 ACH,BST,WGDA 143 229 G2-like Transcription Factor family AT3G46640 44.944 9.25e-19 82.4
Bial24g00453 BST,WGDA 129 176 G2-like Transcription Factor family AT2G20570 43.75 1.74e-06 46.6
Bial4g01727 ACH,BST,WGDA 28 205 G2-like Transcription Factor family AT5G59570 50.0 3.43e-51 165.0
Bial4g01505 . 1 335 G2-like Transcription Factor family AT3G10760 51.462 7.29e-75 229.0
Bial23g02183 . 57 156 G2-like Transcription Factor family AT5G42630 58.594 2.78e-39 134.0
Bial13g02400 BST,WGDA 16 186 G2-like Transcription Factor family AT3G24120 51.462 2.98e-41 150.0
Bial1g02146 WGDA 27 190 G2-like Transcription Factor family AT4G13640 64.848 1.48e-65 207.0
Bial13g00917 ACH,BST,WGDA 1 285 G2-like Transcription Factor family AT4G13640 66.327 5.85e-127 361.0
Bial19g03441 . 49 142 G2-like Transcription Factor family AT2G40260 68.085 7.81e-37 133.0
Bial12g02140 BST,WGDA 127 442 G2-like Transcription Factor family AT3G04450 31.447 1.23e-25 103.0
Bial1g00738 ACH,BST,WGDA 1 276 G2-like Transcription Factor family AT3G24120 66.906 8.53e-127 361.0
Bial19g03643 ACH,BST,WGDA 109 230 G2-like Transcription Factor family AT5G59570 41.6 1.35e-20 87.0
Bial19g03869 BST 286 355 G2-like Transcription Factor family AT4G28610 72.603 9.74e-27 107.0
Bial7g03973 . 106 401 G2-like Transcription Factor family AT4G28610 47.826 2.76e-79 248.0
Bial12g03854 BST 147 202 G2-like Transcription Factor family AT3G46640 63.158 5.97e-21 86.3
Bial12g03865 BST 1 335 G2-like Transcription Factor family AT3G10760 56.734 5.59e-94 279.0
Bial7g03517 ACH 49 142 G2-like Transcription Factor family AT2G40260 68.085 1.55e-36 132.0
Bial13g00320 ACH,BST,WGDA 1 317 G2-like Transcription Factor family AT1G25550 40.774 2.04e-71 223.0
Bial13g00370 ACH,BST,WGDA 42 137 G2-like Transcription Factor family AT2G42660 57.0 1.72e-32 118.0
Bial22g02018 ACH,BST 7 288 G2-like Transcription Factor family AT3G24120 59.298 1.73e-110 318.0
Bial22g02324 BST,WGDA 18 401 G2-like Transcription Factor family AT5G18240 41.045 6.20e-75 233.0
Bial2g03197 . 18 296 G2-like Transcription Factor family AT1G69580 50.53 2.54e-76 234.0
Bial2g03072 . 2 311 G2-like Transcription Factor family AT1G25550 47.658 3.35e-96 289.0
Bial11g02357 BST,WGDA 2 263 G2-like Transcription Factor family AT5G42630 41.617 2.39e-51 169.0
Bial10g02686 BST,WGDA 3 387 G2-like Transcription Factor family AT3G04030 52.658 2.64e-114 336.0
Bial9g01772 WGDA 1 264 G2-like Transcription Factor family AT2G01060 62.642 1.32e-97 285.0
Bial9g02538 ACH,BST,WGDA 22 311 G2-like Transcription Factor family AT1G25550 48.077 7.22e-79 242.0
Bial9g02663 . 25 215 G2-like Transcription Factor family AT1G69580 61.458 1.11e-75 233.0
Bial17g00687 ACH,BST,WGDA 1 306 G2-like Transcription Factor family AT3G46640 48.895 3.90e-85 258.0
Bial17g00332 ACH,BST,WGDA 56 376 G2-like Transcription Factor family AT4G28610 49.552 1.86e-94 286.0
Bial21g00686 BST,WGDA 211 387 G2-like Transcription Factor family AT1G32240 60.753 1.55e-60 191.0
Bial21g00868 BST,WGDA 1 205 G2-like Transcription Factor family AT5G05090 60.952 9.54e-70 213.0
Bial21g01044 ACH,BST,WGDA 1 257 G2-like Transcription Factor family AT3G46640 53.091 3.29e-72 225.0
Bial21g01715 WGDA 79 262 G2-like Transcription Factor family AT2G01060 51.087 2.20e-42 140.0
Bial14g00624 . 324 417 G2-like Transcription Factor family AT2G20570 51.887 5.37e-19 78.6
Bial14g00623 . 36 331 G2-like Transcription Factor family AT2G20570 47.962 5.66e-77 240.0
Bial14g00622 BST,WGDA 29 102 G2-like Transcription Factor family AT5G44190 46.667 3.97e-10 54.3
Bial14g00621 . 29 102 G2-like Transcription Factor family AT5G44190 46.667 3.97e-10 54.3
Bial14g00419 BST,WGDA 6 328 G2-like Transcription Factor family AT2G03500 35.925 4.92e-55 185.0
Bial19g02389 ACH,BST,WGDA 49 347 G2-like Transcription Factor family AT2G40260 37.224 7.29e-44 154.0
Bial19g02715 ACH,BST,WGDA 5 264 G2-like Transcription Factor family AT3G46640 54.317 3.49e-80 244.0
Bial10g02414 ACH,BST 144 270 G2-like Transcription Factor family AT4G13640 56.154 2.24e-34 118.0
Bial10g01863 BST,WGDA 173 345 G2-like Transcription Factor family AT5G06800 62.921 1.57e-66 213.0
Bial10g01699 BST,WGDA 74 174 G2-like Transcription Factor family AT2G40260 59.048 2.54e-32 122.0
Bial10g01505 ACH,BST 60 367 G2-like Transcription Factor family AT4G28610 37.037 3.12e-52 177.0
Bial10g01216 ACH 15 146 G2-like Transcription Factor family AT2G01060 58.333 3.07e-52 169.0
Bial16g01847 BST 47 172 G2-like Transcription Factor family AT2G40260 61.905 3.25e-37 137.0
Bial24g03036 BST,WGDA 1 401 G2-like Transcription Factor family AT5G18240 46.154 1.78e-103 310.0
Bial1g03210 BST,WGDA 1 432 G2-like Transcription Factor family AT2G03500 47.193 1.72e-117 349.0
Bial22g01015 ACH,BST 60 367 G2-like Transcription Factor family AT4G28610 37.037 3.12e-52 177.0
Bial22g01223 BST,WGDA 37 108 G2-like Transcription Factor family AT2G42660 70.833 1.42e-32 118.0
Bial5g00517 ACH,BST,WGDA 1 295 G2-like Transcription Factor family AT3G46640 50.298 1.98e-89 269.0
Bial5g00867 ACH,BST,WGDA 52 376 G2-like Transcription Factor family AT4G28610 49.422 7.44e-95 288.0
Bial5g02520 BST,WGDA 211 326 G2-like Transcription Factor family AT1G32240 61.069 1.07e-40 137.0
Bial5g02545 BST,WGDA 1 245 G2-like Transcription Factor family AT5G45580 36.719 1.53e-38 132.0
Bial7g00956 . 18 280 G2-like Transcription Factor family AT5G18240 51.042 3.47e-83 255.0
Bial7g02394 ACH,BST,WGDA 49 347 G2-like Transcription Factor family AT2G40260 37.942 7.40e-44 154.0
Bial7g02689 ACH,BST,WGDA 5 264 G2-like Transcription Factor family AT3G46640 54.317 3.49e-80 244.0
Bial4g02856 . 303 355 G2-like Transcription Factor family AT4G28610 79.63 9.02e-22 90.1
Bial23g00390 BST 105 355 G2-like Transcription Factor family AT4G28610 53.257 1.08e-82 254.0
Bial24g01990 BST,WGDA 127 442 G2-like Transcription Factor family AT3G04450 31.447 5.36e-26 104.0
Bial21g02501 ACH,BST,WGDA 1 312 G2-like Transcription Factor family AT1G25550 46.849 4.59e-94 284.0
Bial15g02689 ACH,BST 1 384 G2-like Transcription Factor family AT5G44190 41.146 2.79e-62 199.0
Bial15g03227 ACH,BST,WGDA 6 299 G2-like Transcription Factor family AT2G03500 39.172 1.02e-54 183.0
Bial22g01382 BST,WGDA 173 345 G2-like Transcription Factor family AT5G06800 62.921 1.39e-66 213.0
Bial9g00711 ACH,BST,WGDA 1 387 G2-like Transcription Factor family AT1G32240 48.379 5.77e-82 253.0
Bial9g00888 ACH,BST,WGDA 1 266 G2-like Transcription Factor family AT5G05090 53.091 9.63e-70 213.0
Bial9g01052 ACH,BST,WGDA 1 223 G2-like Transcription Factor family AT3G46640 57.021 3.96e-74 229.0
Bial15g01880 WGDA 14 163 G2-like Transcription Factor family AT3G12730 67.722 2.58e-68 215.0
Bial15g01384 ACH,BST 92 316 G2-like Transcription Factor family AT2G03500 40.0 3.00e-37 135.0
Bial13g03401 BST,WGDA 68 432 G2-like Transcription Factor family AT2G03500 41.481 1.46e-80 251.0
Bial16g01526 ACH,BST,WGDA 28 208 G2-like Transcription Factor family AT5G59570 49.171 1.24e-50 164.0
Bial16g01310 ACH,BST 1 335 G2-like Transcription Factor family AT3G10760 51.462 9.87e-75 229.0
Bial18g00393 ACH 21 82 G2-like Transcription Factor family AT2G02060 85.484 1.79e-33 120.0
Bial18g00284 ACH,BST,WGDA 1 325 G2-like Transcription Factor family AT1G25550 48.031 6.48e-99 296.0
Bial18g00162 . 18 296 G2-like Transcription Factor family AT1G69580 50.883 4.22e-78 239.0
Bial14g02160 . 7 80 G2-like Transcription Factor family AT2G02060 59.459 2.42e-25 94.4
Bial12g03211 BST,WGDA 1 401 G2-like Transcription Factor family AT5G18240 46.766 3.98e-105 312.0
Bial20g00291 ACH,BST,WGDA 1 325 G2-like Transcription Factor family AT1G25550 42.571 4.66e-73 227.0
Bial23g01081 . 1 334 G2-like Transcription Factor family AT5G16560 42.147 8.65e-64 206.0
Bial24g03560 BST 1 335 G2-like Transcription Factor family AT3G10760 56.734 5.59e-94 279.0
Bial24g03551 BST 147 202 G2-like Transcription Factor family AT3G46640 63.158 5.97e-21 86.3
Bial3g00180 ACH,BST 1 432 G2-like Transcription Factor family AT2G03500 46.875 2.40e-116 345.0
Bial22g00815 ACH,BST 15 146 G2-like Transcription Factor family AT2G01060 59.091 1.01e-52 171.0
Bial24g03492 BST,WGDA 243 324 G2-like Transcription Factor family AT5G06800 64.706 2.98e-28 107.0
Bial24g03400 BST 112 237 G2-like Transcription Factor family AT5G59570 53.901 1.69e-38 137.0
Bial24g03368 WGDA 42 108 G2-like Transcription Factor family AT2G42660 77.612 8.56e-34 120.0
Bial24g01293 BST,WGDA 82 156 G2-like Transcription Factor family AT5G42630 78.667 1.03e-34 122.0
Bial1g00254 ACH,BST,WGDA 1 233 G2-like Transcription Factor family AT1G25550 34.454 9.69e-33 119.0
Bial1g00300 ACH,BST,WGDA 42 137 G2-like Transcription Factor family AT2G42660 58.163 3.23e-32 117.0
Bial11g01336 . 1 334 G2-like Transcription Factor family AT5G16560 42.67 4.36e-63 204.0
Bial11g00566 BST 51 265 G2-like Transcription Factor family AT4G28610 34.061 2.74e-21 90.5
Bial6g01005 . 42 143 G2-like Transcription Factor family AT2G42660 55.769 2.01e-31 118.0
Bial6g01318 BST,WGDA 1 257 G2-like Transcription Factor family AT2G01060 65.116 3.34e-101 293.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Bial Myb_DNA-binding 3.8e-06 CL0123 TF GARP-G2-like