AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial22g00833 ATGGAAGCACTCGATTCGGACCACAATGTCGGTGAGGTCGACACGTCAGCGCCGTTTGAATCGGTCAAGGAAGCCGTGAGCCTCTTCGGTGGAGTCGGCTTCTGGAAACCGCATAATAATAATAATAATATTAATAATATTAATAAGCAGCACCACCATCATGCTTCTCAGAATGAAGTTGAAGAAGAATTTGATGCTGCAAAAGCGGAAGAGCAAGCCACACAGTTAGCAAACGATCTTGTTGTAAAAGAAAGGGAAACACTTGATGTCTTGAAAGAACTCGAAGCTACAAAAACCACCATTGAAGAGTTAAAACTCAAACTGCAGACAGAATCCATTACAGTCAACCCAATAATCAACGATCAGGCACCAACAGAGGGAAATGACCAAAATACCCTTGACCCGAACCAGAAATCACCAAGTGACAGCTTAATGTGTCCATCATCATCTCCAGGTTTAATATTAATGGAACTGAAGCAAGCTAAACTGAACTTAACAAGAACAACAAGTGATCTTGCTGACATCAGATCGACCGTTGAAACGTTTAAAACAATGATCGAGAAAGAAAGATTGGAACTCGAGAAAACCCGTCAAAGATTATCTTCAAATTGTTTGAAAGTTTCACCTTTTGAAGAAACCGTTGACTTTCCAAGCGAGATTCAAAGGTTGACTTATGAAACGGAGGAGTTTAAGAAAGTTGGAGAGGTGGCAAAATCTGAAGTTTTAGACGCGGTGAGTCAAATTGAACAAACGAAGATGAATATAAAAACAACTGAAATTCGTTTAATTGCAGCTAGAAAGTTGAAGGAAGCTGCGAGAGCGAGTGAAGCGCTTGCACGAGCCGAAATAAACTCAATGTCAAAAAGTCAAACTTTGACCGAACACGAAGGCGTTACGCTTTCTTTTGAAGAATACTCGTGTTTAAAACGGAAAGCTCAAGAGGCAGATGAAGCTTTAGTTAGAAAAGTCAATGAGTCAATGGTCAAAGTCAACGAATCTGAGTTGTCAAAGTCCGAAATGTTAACTAGGGTAGAGGAAGCAATGGAAGAAGTGAAGAACAGTAAGAAGGTTTTAGAAGACGCTTTGAGCAAAGCAGAAAGTGCCAATAAGGAGAAACTGAAAGCCGAAGAAGCTTTAAGAAAATGGCGGTCGGATCATGGTCAAAGGAGAAAGTCAACCGTTCAAAACTCGACCAAGTTCAAGAATGTTTCATGTAGGACCAACAACACTCGTTTGTTGGACGTAAATGGGGCCCACTTGGGAAGTAATACACCTGGCCCGGTTTTGGGGCCCACGTTGTCAATCGGGCAGATTTTGAGCCGGAAGTTGCTTTTGACCGAAGAGTATTCTGGCAAAACCGAGGCAAAAAGGAAGGTTTCTTTGGCACAAATGTTGAGTAAGCCTGGTGGTGGTGGTGGTGGCGGTGACACTGACAATGGTGTGGGTGGGAAACGACGGTCAGGGAAGAGGAAGAAGTTTGGGTTCGGTAGGATTTCGTTTTTGGTGACGAAGCCGAGCAAGAAGAAGAAGAAACATAGTGTAAGTTCAAGACTTTCATGTGCCACTGACTGA 1572 42.49 MEALDSDHNVGEVDTSAPFESVKEAVSLFGGVGFWKPHNNNNNINNINKQHHHHASQNEVEEEFDAAKAEEQATQLANDLVVKERETLDVLKELEATKTTIEELKLKLQTESITVNPIINDQAPTEGNDQNTLDPNQKSPSDSLMCPSSSPGLILMELKQAKLNLTRTTSDLADIRSTVETFKTMIEKERLELEKTRQRLSSNCLKVSPFEETVDFPSEIQRLTYETEEFKKVGEVAKSEVLDAVSQIEQTKMNIKTTEIRLIAARKLKEAARASEALARAEINSMSKSQTLTEHEGVTLSFEEYSCLKRKAQEADEALVRKVNESMVKVNESELSKSEMLTRVEEAMEEVKNSKKVLEDALSKAESANKEKLKAEEALRKWRSDHGQRRKSTVQNSTKFKNVSCRTNNTRLLDVNGAHLGSNTPGPVLGPTLSIGQILSRKLLLTEEYSGKTEAKRKVSLAQMLSKPGGGGGGGDTDNGVGGKRRSGKRKKFGFGRISFLVTKPSKKKKKHSVSSRLSCATD 523
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial22g00833 523 Coils Coil 66 86 - -
Bial22g00833 523 MobiDBLite consensus disorder prediction 52 69 - -
Bial22g00833 523 Coils Coil 91 111 - -
Bial22g00833 523 MobiDBLite consensus disorder prediction 117 148 - -
Bial22g00833 523 Coils Coil 179 203 - -
Bial22g00833 523 MobiDBLite consensus disorder prediction 504 523 - -
Bial22g00833 523 Coils Coil 341 385 - -
Bial22g00833 523 Pfam Weak chloroplast movement under blue light 12 109 IPR008545 -
Bial22g00833 523 Pfam Weak chloroplast movement under blue light 211 389 IPR008545 -
Bial22g00833 523 Coils Coil 264 284 - -
Bial22g00833 523 MobiDBLite consensus disorder prediction 464 496 - -
Bial22g00833 523 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 11 112 - GO:0005829(PANTHER)|GO:0009903(PANTHER)|GO:0009904(PANTHER)
Bial22g00833 523 MobiDBLite consensus disorder prediction 43 71 - -
Bial22g00833 523 MobiDBLite consensus disorder prediction 117 149 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial22g00833 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
182203 Bial10g01240 Bial22g00833
363710 Bial12g02851 Bial22g00833
374158 Bial22g00833 Bial24g02691
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
671054 Bial Bial10g01240 Bial-Chr10:12372143 Bial22g00833 Bial-Chr22:7943610
698640 Bial Bial19g03517 Bial-Chr19:71297959 Bial22g00833 Bial-Chr22:7943610
707260 Bial Bial22g00833 Bial-Chr22:7943610 Bial7g03539 Bial-Chr7:70735191
782132 Bial Bial10g01238 Bial-Chr10:12350180 Bial22g00833 Bial-Chr22:7943610
793247 Bial Bial12g02851 Bial-Chr12:58585778 Bial22g00833 Bial-Chr22:7943610
840089 Bial Bial22g00833 Bial-Chr22:7943610 Bial24g02691 Bial-Chr24:57626156