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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial22g00844 ATGACGTCTACTAGTTTGATGTCATCGTTGAGGTTGTCTTCTGTCTCATCCATTGTTCCACCAATTTCATTTTCTTCAAACAAATCATTGCATAATTCTGTCAAGTTTTCTCCACGCCGTTGGACATTCCCACAGTTTCTTCATGTGAAGCCTGGTAAAGGAGCTGCTTATGTGAGGACTACACTACGGAATCATATAACCGGAAACTCTGTTGAGAAAACTTTCCGAGCTGGAAGCAAGTCATCATACGAGGAAGTTCGTCTTAACGAGTCGGATATGGGAGATAAGACGAAATGGCTAAAAGAAGGCATGGAGTGCAGTTTGCTATTTTGGAAGGGAAAAGTTATCGATTTTGAGCTGCCGATACAGGTTAAAGTGAAAATAGTCGATGTTGACCCTGGTGTAAAAGGTGGATCGAAGCCAGCGACTGTAGAAACAGGTGCGGTTGTTTATGTTCCTTTGTTTGTGGACAGGGATCAGGAGATTATTGTGGATACAAGAACAGGGCAGTACGTGAGTCGTGTATGA 528 42.8 MTSTSLMSSLRLSSVSSIVPPISFSSNKSLHNSVKFSPRRWTFPQFLHVKPGKGAAYVRTTLRNHITGNSVEKTFRAGSKSSYEEVRLNESDMGDKTKWLKEGMECSLLFWKGKVIDFELPIQVKVKIVDVDPGVKGGSKPATVETGAVVYVPLFVDRDQEIIVDTRTGQYVSRV 175
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial22g00844 175 Gene3D - 31 80 IPR014722 -
Bial22g00844 175 CDD S1-EF-P-repeat-2 124 174 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Bial22g00844 175 SMART EFP-2 68 116 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Bial22g00844 175 Pfam Elongation factor P (EF-P) KOW-like domain 45 80 IPR013185 -
Bial22g00844 175 PANTHER ELONGATION FACTOR P 43 80 IPR020599 GO:0003746(PANTHER)|GO:0005737(PANTHER)
Bial22g00844 175 SUPERFAMILY Nucleic acid-binding proteins 124 175 IPR012340 -
Bial22g00844 175 Gene3D - 123 175 IPR012340 -
Bial22g00844 175 Pfam Elongation factor P, C-terminal 124 174 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
Bial22g00844 175 SUPERFAMILY Nucleic acid-binding proteins 80 121 IPR012340 -
Bial22g00844 175 ProSitePatterns Elongation factor P signature. 140 159 IPR013852 -
Bial22g00844 175 FunFam Elongation factor P 123 175 - -
Bial22g00844 175 PIRSF EF-P 79 175 IPR020599 -
Bial22g00844 175 PIRSF EF-P 26 82 IPR020599 -
Bial22g00844 175 Pfam Elongation factor P (EF-P) OB domain 81 116 IPR001059 GO:0003746(InterPro)|GO:0006414(InterPro)
Bial22g00844 175 SUPERFAMILY Translation proteins SH3-like domain 35 80 IPR008991 -
Bial22g00844 175 Gene3D - 81 121 IPR012340 -
Bial22g00844 175 SMART Elong-fact-P-C-2 124 174 IPR015365 GO:0005737(InterPro)|GO:0043043(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial22g00844 K02356 elongation factor P
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Event-related genes

Select Gene_1 Gene_2 Event_name
182209 Bial10g01252 Bial22g00844
363597 Bial12g02713 Bial22g00844
374159 Bial22g00844 Bial24g02557
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
671064 Bial Bial10g01252 Bial-Chr10:12559982 Bial22g00844 Bial-Chr22:8127649
793150 Bial Bial12g02713 Bial-Chr12:57342538 Bial22g00844 Bial-Chr22:8127649
840013 Bial Bial22g00844 Bial-Chr22:8127649 Bial24g02557 Bial-Chr24:56446209