AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial22g00943 ATGGCGATCGCCGTCGCATCTTCCTGGTTTAACGCCCTCGGTACCTCTCGCTCCTCTCAACGTCTATTCTTCTCGCCGCAAATTTCAGCTACTCGTTTAGTCATTCCTAAAGCGGCAGTTACCACCAGCAGTAACAGTCAAAATCCCAAGAAGAAACACACTCCTCGTAAATCATCACCTCAGAAAGAAGCTAATATTCAAAAGCTTTCAAGAAGATCAAGAGATGAAAGACAGTATTCAAATGCTGATGATTACAGTGATACAAAAAATGCAGAACAACCTCAGTCTACCGCCTTCAAGTCGTTTGGTACACAGCGAAAAAACGCCAAAGGTTTTATGGGTAACATAAAGGATCAACAGGGTGAGACTGCTAAAATTCAAGATGCTTCTTTTCTAAACGCCGTTGTGAAGGTTTACTGTACTCATACTGCACCTGATTATTCCCTCCCTTGGCAAAAGCAAAGACAGTATACAAGTACAGGAAGTGCTTTCATGATTGGTGACGGAAAGCTTTTAACAAATGCTCATTGTGTTGAACATAACACACAAGTCAAAGTCAAGAGAAGGGGGGATGATACCAAGTATGTGGCTAAGGTTTTAGCTAAAGGCATGGAATGCGACATAGCTTTGCTTTCGGTGGAAAATGAGAAATTCTGGAAAGGAGCTGAGCCACTTCAGTTCGGTCATTTGCCCCGTCTTCAGGATCCAGTTACTGTTGTAGGGTATCCACTTGGTGGAGACACCATTTCAGTGACCAAAGGGGTTGTGTCTCGAATAGAGGTTACCTCTTATGCTCATGGGTCAGCTGAACTGTTGGGCATTCAAATTGATGCAGCAATTAATCCTGGTAATAGTGGTGGTCCTGCTTTCAATGATCAGGGAGAATGCATCGGTGTAGCATTTCAGGTGTACAGGTCTGATGATGTTGAAAACATTGGGTATGTAATTCCAACGACTGTTGTGTCTCATTTCTTAGATGATTATGAGAGAAATGGGAAGTATACCGGTTTCCCTTCCCTTGGAATATTATTACAAAAGTTAGAGAATCCCGCGTTACGCGCCTGCTTAAAAGTGCCATCCAATGAGGGTGTACTTGTCCGGCGTGTGGAGCCCACTTCTGGTGCCAGTAATGTCTTGAAGGAGGGGGATGTAATTGTAAGCTTTGATGGTATAGAAGTTGGGTCAGAAGGGACAGTCCCATTTCGGTCAACCGAACGCATTGCATTCCGCTACCTCATCAGTCAAAAATTCACTGGGGATATGGCAGAGCTTGGAATCATCAGATCAGGGGCTTTTATAAAAGTTCACACTGCTATGAATCCGCGTTATCATTTGGTACCGTATCATATTGATGGTGGTCAGCCGTCATACTTGATAGTAGCTGGCTTAGTTTTTACTCCTCTATCAGAACCATTAATAGATGAGGAATGTGAAGACAGCATAGGGTTAAAATTATTGACAAAGGCACGGTACTCTATGGCGAGGTTCAAAGGAGAACAGATTGTGATCTTATCACAGGTATTGGCAAATGAAGTTAATATTGGGTATGAGGATATGAGCAATGAGCAGGTTCTGAAGTTCAATGGAACGCGAATAAAGAATATTCACCATCTTGCTCATCTTGTCGATTCATGCACGGACAAATACCTGATTTTTGAATTTGAAGACAATTATCTTGCGGTTTTGGAACGAGAAGCTTCTTCATCCGCCTCACCATGCATCCTTAAAGATTATGGCATCCCATCAGAGAGATCTTCTGATCTTCTAGAACCATACGTGGACCCCGTTGGTGAAAACCAAGTAATCGAGCACCATGATCTTGGTGACAGTCCTGTCACAAATTCAGATTTCGGGTTTGACGGGCTTCAATGGGCTTGA 1878 43.13 MAIAVASSWFNALGTSRSSQRLFFSPQISATRLVIPKAAVTTSSNSQNPKKKHTPRKSSPQKEANIQKLSRRSRDERQYSNADDYSDTKNAEQPQSTAFKSFGTQRKNAKGFMGNIKDQQGETAKIQDASFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGDGKLLTNAHCVEHNTQVKVKRRGDDTKYVAKVLAKGMECDIALLSVENEKFWKGAEPLQFGHLPRLQDPVTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSAELLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSDDVENIGYVIPTTVVSHFLDDYERNGKYTGFPSLGILLQKLENPALRACLKVPSNEGVLVRRVEPTSGASNVLKEGDVIVSFDGIEVGSEGTVPFRSTERIAFRYLISQKFTGDMAELGIIRSGAFIKVHTAMNPRYHLVPYHIDGGQPSYLIVAGLVFTPLSEPLIDEECEDSIGLKLLTKARYSMARFKGEQIVILSQVLANEVNIGYEDMSNEQVLKFNGTRIKNIHHLAHLVDSCTDKYLIFEFEDNYLAVLEREASSSASPCILKDYGIPSERSSDLLEPYVDPVGENQVIEHHDLGDSPVTNSDFGFDGLQWA 625
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial22g00943 625 MobiDBLite consensus disorder prediction 67 83 - -
Bial22g00943 625 MobiDBLite consensus disorder prediction 39 102 - -
Bial22g00943 625 CDD PDZ-serine-protease 338 435 - -
Bial22g00943 625 PRINTS HtrA-DegQ protease family signature 270 287 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Bial22g00943 625 PRINTS HtrA-DegQ protease family signature 378 390 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Bial22g00943 625 PRINTS HtrA-DegQ protease family signature 169 181 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Bial22g00943 625 PRINTS HtrA-DegQ protease family signature 191 211 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Bial22g00943 625 Gene3D - 341 443 IPR036034 GO:0005515(InterPro)
Bial22g00943 625 PANTHER - 38 592 - GO:0004252(PANTHER)
Bial22g00943 625 SMART pdz-new 338 430 IPR001478 GO:0005515(InterPro)
Bial22g00943 625 Gene3D - 116 219 IPR043504 -
Bial22g00943 625 MobiDBLite consensus disorder prediction 84 102 - -
Bial22g00943 625 Gene3D - 230 340 IPR043504 -
Bial22g00943 625 SUPERFAMILY PDZ domain-like 361 442 IPR036034 GO:0005515(InterPro)
Bial22g00943 625 FunFam Protease Do-like 9 116 218 - -
Bial22g00943 625 Pfam Trypsin-like peptidase domain 161 299 - -
Bial22g00943 625 SUPERFAMILY Trypsin-like serine proteases 131 333 IPR009003 -
Bial22g00943 625 Gene3D - 444 594 IPR046449 -
Bial22g00943 625 Pfam PDZ domain 446 587 IPR041517 -
Bial22g00943 625 FunFam protease Do-like 9 220 330 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial22g00943 K25896 protease Do-like 2, chloroplastic [EC:3.4.21.-]
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Event-related genes

Select Gene_1 Gene_2 Event_name
182265 Bial10g01349 Bial22g00943
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr22:9067915 Bial8g02722 Bial-Chr8:67390926 dispersed
Bial Bial-Chr10:13506756 Bial22g00943 Bial-Chr22:9067915 wgd