AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial22g00954 ATGGCCGTCAAATACTCCGTTGTGGACGCGTTTACCGACACCGCGTTTAAAGGAAATCCGGCTGTCGTGTGTTTGTTAGAAGATACTGAGAAAGATGATAAGTGGTTGCAGTCAGTTGCAACTGAATTTAATCTTCCAACAACGTGTTACCTGACTCCGGTTGCAGATCAGGGCTCCGAACACCCGAGATTCAAGCTCCGGTGGTTCACTACTGTATCTGAGGTGAAACTTTGTGGTCATGCAACTTTAGCAGCTGCACACTTTCTTTTCCGATCTGGATTGGTGAAATCTAATGTGATTGAATTCTCAACGTTATCCGGAATTCTGATTGCTAAACGAATTCCGGATATTATATTCGGGGAAGTACCAAATGAGGAAATAGATGATAGATTCTACATAGAGTTGGATTTTCCGGTTGTGCCGATTTCAGATTACAAAGAAGTTGAGGTTTCCACAATTTCGGAGATATTAAATGGTGTTTCTGTTGTTGATGTTGTGAAGAAGAATGCACTTGATGATATTATTGTGGTGCTTCCATCTGGAGAAGAAGTTGCAGCATTCAAGCCACAATTTAATAAGATCAAAGAAGCTCCGGGCAGGGCGATAATAATTACAGCACCTGCTTCTAACGGGTCAGGGTTTGACTTTTGTTCTCGTGTGTTCGGGCCTAAGATTGGTGTTGATGAGGATATTGTTACCGGGAGTGCACATTGTGCATTAGCAGTCTATTGGCATGAGAAGTTGGGGAAATGCGATTTTGTTGCATTACAGGCATCCTGTAGAAGTGGTGTATTGCATGTCCATCTTGATAAGGTGAATCAACGAGTGCTTATTCGCGGTAAAGCCACCACAGTCATGGAAGGGTCTCTTTTGGTGTAA 879 42.89 MAVKYSVVDAFTDTAFKGNPAVVCLLEDTEKDDKWLQSVATEFNLPTTCYLTPVADQGSEHPRFKLRWFTTVSEVKLCGHATLAAAHFLFRSGLVKSNVIEFSTLSGILIAKRIPDIIFGEVPNEEIDDRFYIELDFPVVPISDYKEVEVSTISEILNGVSVVDVVKKNALDDIIVVLPSGEEVAAFKPQFNKIKEAPGRAIIITAPASNGSGFDFCSRVFGPKIGVDEDIVTGSAHCALAVYWHEKLGKCDFVALQASCRSGVLHVHLDKVNQRVLIRGKATTVMEGSLLV 292
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial22g00954 292 PIRSF Ismrse-PhzF 1 292 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Bial22g00954 292 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 7 288 - -
Bial22g00954 292 Pfam Phenazine biosynthesis-like protein 8 288 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Bial22g00954 292 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 139 280 - -
Bial22g00954 292 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 1 292 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Bial22g00954 292 SUPERFAMILY Diaminopimelate epimerase-like 1 291 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial22g00954 K06998 trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:13621964 Bial22g00954 Bial-Chr22:9178073 dispersed
Bial Bial-Chr22:9170048 Bial22g00954 Bial-Chr22:9178073 dispersed
Bial Bial-Chr22:9178073 Bial22g00956 Bial-Chr22:9213368 proximal
Bial Bial-Chr22:9174303 Bial22g00954 Bial-Chr22:9178073 tandem