AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bial22g00956 ATGACGAAAAACCTCGTGAAATACTCCGTCGTGGACGCATTTACAGACACGCCGTTTAAAGGAAACCCGGCGGCTGTGTGCTGGTTAGACGGCGTACAGAAAGACGATAAGTGGCTGCAATCAGTTGCAACTGAATTTAATATCTCTGAGACCTGTTACTTGACTCCGATTGCTAATCACGATACTGAGAACCCTAGGTTCAGTCTCAGGTGGTTCACCCCTGTAGCTGAGGTGGAGCTCTGTGGTCATGCAACTTTAGCAGCCTCACACTTTCTTTTCCAATCTGGATTGGTGAATTCTGACACAGTCGAATACTCAACCCTATCGGGAATTCTAACTGCCAAAAAAATTTTAGCTAACAAGATCAATGGTGAATCTAATGGTGCATCAGAAGACAGCTACTACATAGAATTGGATTTCCCTGTCGTGCCAGTTTCAGATTACAATGATCTCAAGGTTTCTGCAATTTCAGAAATATTAGATGGTGCTTCGGTTGTTGATGTAAAGAAGAACACACTCGATGACATCTATGTGGAACTTTCGTCTGCAAAAGAAGTTGAAGAATACAAACCGCAGATTAATAAGATTAAGGAATCCCCGGGCCGAGGGATAGTAATTACAGCACGCGCACCTAATGGGTCAGGGTTTGACTTTTATAGTCGCTTCTTCTGTCCAAAATTAGGAATTGATGAGGATCCGGTTTGTGGTAGTGCACATTGCGCGTTAGCGGCTTATTGGCATGATAAGTTGGGGAAATGTGATTTTGTTGCATACCAGGCATCACCTAGAAGCGGTGTATTACATGTGCATCTTGATAAGGAGAATCAAAGAGTGCTTCTTCGAGGTAAAGCCACCACGGTCATGGAAGGGTCTCTTTTGGTAGACGCGTTCACCGACACCGCCTTTAAAGGAAATCCAGCAGCCGTGTGTTGGTTGGACTTAGAAGATATTTTTGAGATTAAATATGATGATAAGTGGTTGCAATCAGTTGCAACTGAATTCAACCTTCCAACTACCGCTTACCTGACAGCTCCTGCAGCTGTTGATCACGCTTCCGAAAACCCGAGATTTAATCTCCGATGGTTCACTCCTGTATCTGAGGTTGAACTGTGTGGTCATGCAACTTTAGCAGCCTCACACTTTCTTTTCCGGTCCGGATTTGTGAATACTAACACAATTGAATTCTCAACTCTATCGGGAGTTTTAACGGCCAAACGAATTCAGGATAACAAGATCAATGGTGAATTAGAAGCTAGCTTCTACATAGAATTGGATTTTCCGGTAGTGTCTGTTTCGGATTTCAATGAACTTGAGGTTTCCGCAATTTCGGAGATATTAAATGGTGTTTCTGTTGTTGATGTTCTAAAGAATGCGTATGATGATATCATTGTGGTTCTTTCATCAGGAGAAGAAGTTGCAGATTTGAAGCCTCAGTTTAATAAGATCAAAGCGGCTCCAGGCAGAGGGATAATCATTACAGCACCTGCGCCTAACGGGTCAGGGTTTGACTTTATTTCTCGCTTTTTCTGCCCGAAATATGGAGTTGATGAGGATCCTGTTTGTGGGAGCGCGCATTGCGCTTTGGTAACTTATTGGCATGAGAAGTTGGGGAAATGTGATTTTGTTGCATATCAGGCCTCAAGTAGAAGTGGCATATTACATATACATCTTGATAAAGAGATTCAAAGAGTACTTCTTCGAGGTAAAGCCGCCACAGTCATGGAAGGATCTCTTTTGGTCTAA 1743 42.97 MTKNLVKYSVVDAFTDTPFKGNPAAVCWLDGVQKDDKWLQSVATEFNISETCYLTPIANHDTENPRFSLRWFTPVAEVELCGHATLAASHFLFQSGLVNSDTVEYSTLSGILTAKKILANKINGESNGASEDSYYIELDFPVVPVSDYNDLKVSAISEILDGASVVDVKKNTLDDIYVELSSAKEVEEYKPQINKIKESPGRGIVITARAPNGSGFDFYSRFFCPKLGIDEDPVCGSAHCALAAYWHDKLGKCDFVAYQASPRSGVLHVHLDKENQRVLLRGKATTVMEGSLLVDAFTDTAFKGNPAAVCWLDLEDIFEIKYDDKWLQSVATEFNLPTTAYLTAPAAVDHASENPRFNLRWFTPVSEVELCGHATLAASHFLFRSGFVNTNTIEFSTLSGVLTAKRIQDNKINGELEASFYIELDFPVVSVSDFNELEVSAISEILNGVSVVDVLKNAYDDIIVVLSSGEEVADLKPQFNKIKAAPGRGIIITAPAPNGSGFDFISRFFCPKYGVDEDPVCGSAHCALVTYWHEKLGKCDFVAYQASSRSGILHIHLDKEIQRVLLRGKAATVMEGSLLV 580
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bial22g00956 580 Pfam Phenazine biosynthesis-like protein 294 576 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Bial22g00956 580 Pfam Phenazine biosynthesis-like protein 11 290 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Bial22g00956 580 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 428 568 - -
Bial22g00956 580 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 142 282 - -
Bial22g00956 580 SUPERFAMILY Diaminopimelate epimerase-like 7 293 - -
Bial22g00956 580 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 10 290 - -
Bial22g00956 580 NCBIfam PhzF family phenazine biosynthesis isomerase 293 578 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Bial22g00956 580 NCBIfam PhzF family phenazine biosynthesis isomerase 8 292 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Bial22g00956 580 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 6 294 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Bial22g00956 580 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 293 576 - -
Bial22g00956 580 SUPERFAMILY Diaminopimelate epimerase-like 293 579 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bial22g00956 K06998 trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
Bial22g00956 K01778 diaminopimelate epimerase [EC:5.1.1.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Bial Bial-Chr10:13629557 Bial22g00956 Bial-Chr22:9213368 dispersed
Bial Bial-Chr22:9174303 Bial22g00956 Bial-Chr22:9213368 dispersed
Bial Bial-Chr22:9178073 Bial22g00956 Bial-Chr22:9213368 proximal